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Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data

As the field of deep learning has grown in recent years, its application to the domain of raw resting-state electroencephalography (EEG) has also increased. Relative to traditional machine learning methods or deep learning methods applied to manually engineered features, there are fewer methods for...

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Autores principales: Ellis, Charles A., Sattiraju, Abhinav, Miller, Robyn L., Calhoun, Vince D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592604/
https://www.ncbi.nlm.nih.gov/pubmed/37873255
http://dx.doi.org/10.1101/2023.04.29.538813
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author Ellis, Charles A.
Sattiraju, Abhinav
Miller, Robyn L.
Calhoun, Vince D.
author_facet Ellis, Charles A.
Sattiraju, Abhinav
Miller, Robyn L.
Calhoun, Vince D.
author_sort Ellis, Charles A.
collection PubMed
description As the field of deep learning has grown in recent years, its application to the domain of raw resting-state electroencephalography (EEG) has also increased. Relative to traditional machine learning methods or deep learning methods applied to manually engineered features, there are fewer methods for developing deep learning models on small raw EEG datasets. One potential approach for enhancing deep learning performance, in this case, is the use of transfer learning. While a number of studies have presented transfer learning approaches for manually engineered EEG features, relatively few approaches have been developed for raw resting-state EEG. In this study, we propose a novel EEG transfer learning approach wherein we first train a model on a large publicly available single-channel sleep stage classification dataset. We then use the learned representations to develop a classifier for automated major depressive disorder diagnosis with raw multichannel EEG. Statistical testing reveals that our approach significantly improves the performance of our model (p < 0.05), and we also find that the performance of our approach exceeds that of many previous studies using both engineered features and raw EEG. We further examine how transfer learning affected the representations learned by the model through a pair of explainability analyses, identifying key frequency bands and channels utilized across models. Our proposed approach represents a significant step forward for the domain of raw resting-state EEG classification and has broader implications for use with other electrophysiology and time-series modalities. Importantly, it has the potential to expand the use of deep learning methods across a greater variety of raw EEG datasets and lead to the development of more reliable EEG classifiers.
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spelling pubmed-105926042023-10-24 Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data Ellis, Charles A. Sattiraju, Abhinav Miller, Robyn L. Calhoun, Vince D. bioRxiv Article As the field of deep learning has grown in recent years, its application to the domain of raw resting-state electroencephalography (EEG) has also increased. Relative to traditional machine learning methods or deep learning methods applied to manually engineered features, there are fewer methods for developing deep learning models on small raw EEG datasets. One potential approach for enhancing deep learning performance, in this case, is the use of transfer learning. While a number of studies have presented transfer learning approaches for manually engineered EEG features, relatively few approaches have been developed for raw resting-state EEG. In this study, we propose a novel EEG transfer learning approach wherein we first train a model on a large publicly available single-channel sleep stage classification dataset. We then use the learned representations to develop a classifier for automated major depressive disorder diagnosis with raw multichannel EEG. Statistical testing reveals that our approach significantly improves the performance of our model (p < 0.05), and we also find that the performance of our approach exceeds that of many previous studies using both engineered features and raw EEG. We further examine how transfer learning affected the representations learned by the model through a pair of explainability analyses, identifying key frequency bands and channels utilized across models. Our proposed approach represents a significant step forward for the domain of raw resting-state EEG classification and has broader implications for use with other electrophysiology and time-series modalities. Importantly, it has the potential to expand the use of deep learning methods across a greater variety of raw EEG datasets and lead to the development of more reliable EEG classifiers. Cold Spring Harbor Laboratory 2023-10-15 /pmc/articles/PMC10592604/ /pubmed/37873255 http://dx.doi.org/10.1101/2023.04.29.538813 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Ellis, Charles A.
Sattiraju, Abhinav
Miller, Robyn L.
Calhoun, Vince D.
Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data
title Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data
title_full Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data
title_fullStr Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data
title_full_unstemmed Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data
title_short Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data
title_sort improving multichannel raw electroencephalography-based diagnosis of major depressive disorder via transfer learning with single channel sleep stage data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592604/
https://www.ncbi.nlm.nih.gov/pubmed/37873255
http://dx.doi.org/10.1101/2023.04.29.538813
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