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Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates

Biopolymer condensates often emerge as a multi-droplet state and never coalesce into one large droplet within the experimental timespan. This contradicts the prediction of classical polymer physics which suggests the existence of one large droplet beyond the phase transition. Previous work revealed...

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Autores principales: Chattaraj, Aniruddha, Shakhnovich, Eugene I
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592914/
https://www.ncbi.nlm.nih.gov/pubmed/37873097
http://dx.doi.org/10.1101/2023.10.03.560747
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author Chattaraj, Aniruddha
Shakhnovich, Eugene I
author_facet Chattaraj, Aniruddha
Shakhnovich, Eugene I
author_sort Chattaraj, Aniruddha
collection PubMed
description Biopolymer condensates often emerge as a multi-droplet state and never coalesce into one large droplet within the experimental timespan. This contradicts the prediction of classical polymer physics which suggests the existence of one large droplet beyond the phase transition. Previous work revealed that the sticker-spacer architecture of biopolymers may dynamically stabilize the multi-droplet state. Here, we simulate the condensate coalescence using metadynamics approach and reveal two distinct physical mechanisms underlying the fusion of droplets. Condensates made of sticker-spacer polymers readily undergo a kinetic arrest when stickers exhibit slow exchange while fast exchanging stickers at similar levels of saturation allow merger to equilibrium states. On the other hand, condensates composed of homopolymers fuse readily until they reach a threshold density. We also show that the inter-condensate exchange of chains offers a general mechanism that drives the fusion. We map the range of mechanisms of kinetic arrest from slow sticker exchange dynamics to density mediated in terms of energetic separation of stickers and spacers. In that vein, our simulations predict that the biological condensates may show a re-entrant dynamic merger behavior at a particular range of sticker-spacer energetics. Mechanistic underpinnings revealed in this work have broader implications in polymer physics and condensate biology.
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spelling pubmed-105929142023-10-24 Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates Chattaraj, Aniruddha Shakhnovich, Eugene I bioRxiv Article Biopolymer condensates often emerge as a multi-droplet state and never coalesce into one large droplet within the experimental timespan. This contradicts the prediction of classical polymer physics which suggests the existence of one large droplet beyond the phase transition. Previous work revealed that the sticker-spacer architecture of biopolymers may dynamically stabilize the multi-droplet state. Here, we simulate the condensate coalescence using metadynamics approach and reveal two distinct physical mechanisms underlying the fusion of droplets. Condensates made of sticker-spacer polymers readily undergo a kinetic arrest when stickers exhibit slow exchange while fast exchanging stickers at similar levels of saturation allow merger to equilibrium states. On the other hand, condensates composed of homopolymers fuse readily until they reach a threshold density. We also show that the inter-condensate exchange of chains offers a general mechanism that drives the fusion. We map the range of mechanisms of kinetic arrest from slow sticker exchange dynamics to density mediated in terms of energetic separation of stickers and spacers. In that vein, our simulations predict that the biological condensates may show a re-entrant dynamic merger behavior at a particular range of sticker-spacer energetics. Mechanistic underpinnings revealed in this work have broader implications in polymer physics and condensate biology. Cold Spring Harbor Laboratory 2023-10-04 /pmc/articles/PMC10592914/ /pubmed/37873097 http://dx.doi.org/10.1101/2023.10.03.560747 Text en https://creativecommons.org/licenses/by-nc/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (https://creativecommons.org/licenses/by-nc/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Chattaraj, Aniruddha
Shakhnovich, Eugene I
Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
title Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
title_full Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
title_fullStr Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
title_full_unstemmed Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
title_short Separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
title_sort separation of sticker-spacer energetics governs the coalescence of biomolecular condensates
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592914/
https://www.ncbi.nlm.nih.gov/pubmed/37873097
http://dx.doi.org/10.1101/2023.10.03.560747
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