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Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models

OBJECTIVE: Absolute risk models estimate an individual’s future disease risk over a specified time interval. Applications utilizing server-side risk tooling, such as the R-based iCARE (R-iCARE), to build, validate, and apply absolute risk models, face serious limitations in portability and privacy d...

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Autores principales: Balasubramanian, Jeya Balaji, Choudhury, Parichoy Pal, Mukhopadhyay, Srijon, Ahearn, Thomas, Chatterjee, Nilanjan, García-Closas, Montserrat, Almeida, Jonas S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10593073/
https://www.ncbi.nlm.nih.gov/pubmed/37873020
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author Balasubramanian, Jeya Balaji
Choudhury, Parichoy Pal
Mukhopadhyay, Srijon
Ahearn, Thomas
Chatterjee, Nilanjan
García-Closas, Montserrat
Almeida, Jonas S.
author_facet Balasubramanian, Jeya Balaji
Choudhury, Parichoy Pal
Mukhopadhyay, Srijon
Ahearn, Thomas
Chatterjee, Nilanjan
García-Closas, Montserrat
Almeida, Jonas S.
author_sort Balasubramanian, Jeya Balaji
collection PubMed
description OBJECTIVE: Absolute risk models estimate an individual’s future disease risk over a specified time interval. Applications utilizing server-side risk tooling, such as the R-based iCARE (R-iCARE), to build, validate, and apply absolute risk models, face serious limitations in portability and privacy due to their need for circulating user data in remote servers for operation. Our objective was to overcome these limitations. MATERIALS AND METHODS: We refactored R-iCARE into a Python package (Py-iCARE) then compiled it to WebAssembly (Wasm-iCARE): a portable web module, which operates entirely within the privacy of the user’s device. RESULTS: We showcase the portability and privacy of Wasm-iCARE through two applications: for researchers to statistically validate risk models, and to deliver them to end-users. Both applications run entirely on the client-side, requiring no downloads or installations, and keeps user data on-device during risk calculation. CONCLUSIONS: Wasm-iCARE fosters accessible and privacy-preserving risk tools, accelerating their validation and delivery.
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spelling pubmed-105930732023-10-24 Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models Balasubramanian, Jeya Balaji Choudhury, Parichoy Pal Mukhopadhyay, Srijon Ahearn, Thomas Chatterjee, Nilanjan García-Closas, Montserrat Almeida, Jonas S. ArXiv Article OBJECTIVE: Absolute risk models estimate an individual’s future disease risk over a specified time interval. Applications utilizing server-side risk tooling, such as the R-based iCARE (R-iCARE), to build, validate, and apply absolute risk models, face serious limitations in portability and privacy due to their need for circulating user data in remote servers for operation. Our objective was to overcome these limitations. MATERIALS AND METHODS: We refactored R-iCARE into a Python package (Py-iCARE) then compiled it to WebAssembly (Wasm-iCARE): a portable web module, which operates entirely within the privacy of the user’s device. RESULTS: We showcase the portability and privacy of Wasm-iCARE through two applications: for researchers to statistically validate risk models, and to deliver them to end-users. Both applications run entirely on the client-side, requiring no downloads or installations, and keeps user data on-device during risk calculation. CONCLUSIONS: Wasm-iCARE fosters accessible and privacy-preserving risk tools, accelerating their validation and delivery. Cornell University 2023-10-13 /pmc/articles/PMC10593073/ /pubmed/37873020 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Balasubramanian, Jeya Balaji
Choudhury, Parichoy Pal
Mukhopadhyay, Srijon
Ahearn, Thomas
Chatterjee, Nilanjan
García-Closas, Montserrat
Almeida, Jonas S.
Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
title Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
title_full Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
title_fullStr Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
title_full_unstemmed Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
title_short Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
title_sort wasm-icare: a portable and privacy-preserving web module to build, validate, and apply absolute risk models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10593073/
https://www.ncbi.nlm.nih.gov/pubmed/37873020
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