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spatialMaxent: Adapting species distribution modeling to spatial data
Conventional practices in species distribution modeling lack predictive power when the spatial structure of data is not taken into account. However, choosing a modeling approach that accounts for overfitting during model training can improve predictive performance on spatially separated test data, l...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10594137/ https://www.ncbi.nlm.nih.gov/pubmed/37881225 http://dx.doi.org/10.1002/ece3.10635 |
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author | Bald, Lisa Gottwald, Jannis Zeuss, Dirk |
author_facet | Bald, Lisa Gottwald, Jannis Zeuss, Dirk |
author_sort | Bald, Lisa |
collection | PubMed |
description | Conventional practices in species distribution modeling lack predictive power when the spatial structure of data is not taken into account. However, choosing a modeling approach that accounts for overfitting during model training can improve predictive performance on spatially separated test data, leading to more reliable models. This study introduces spatialMaxent (https://github.com/envima/spatialMaxent), a software that combines state‐of‐the‐art spatial modeling techniques with the popular species distribution modeling software Maxent. It includes forward‐variable‐selection, forward‐feature‐selection, and regularization‐multiplier tuning based on spatial cross‐validation, which enables addressing overfitting during model training by considering the impact of spatial dependency in the training data. We assessed the performance of spatialMaxent using the National Center for Ecological Analysis and Synthesis dataset, which contains over 200 anonymized species across six regions worldwide. Our results show that spatialMaxent outperforms both conventional Maxent and models optimized according to literature recommendations without using a spatial tuning strategy in 80 percent of the cases. spatialMaxent is user‐friendly and easily accessible to researchers, government authorities, and conservation practitioners. Therefore, it has the potential to play an important role in addressing pressing challenges of biodiversity conservation. |
format | Online Article Text |
id | pubmed-10594137 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-105941372023-10-25 spatialMaxent: Adapting species distribution modeling to spatial data Bald, Lisa Gottwald, Jannis Zeuss, Dirk Ecol Evol Research Articles Conventional practices in species distribution modeling lack predictive power when the spatial structure of data is not taken into account. However, choosing a modeling approach that accounts for overfitting during model training can improve predictive performance on spatially separated test data, leading to more reliable models. This study introduces spatialMaxent (https://github.com/envima/spatialMaxent), a software that combines state‐of‐the‐art spatial modeling techniques with the popular species distribution modeling software Maxent. It includes forward‐variable‐selection, forward‐feature‐selection, and regularization‐multiplier tuning based on spatial cross‐validation, which enables addressing overfitting during model training by considering the impact of spatial dependency in the training data. We assessed the performance of spatialMaxent using the National Center for Ecological Analysis and Synthesis dataset, which contains over 200 anonymized species across six regions worldwide. Our results show that spatialMaxent outperforms both conventional Maxent and models optimized according to literature recommendations without using a spatial tuning strategy in 80 percent of the cases. spatialMaxent is user‐friendly and easily accessible to researchers, government authorities, and conservation practitioners. Therefore, it has the potential to play an important role in addressing pressing challenges of biodiversity conservation. John Wiley and Sons Inc. 2023-10-24 /pmc/articles/PMC10594137/ /pubmed/37881225 http://dx.doi.org/10.1002/ece3.10635 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Bald, Lisa Gottwald, Jannis Zeuss, Dirk spatialMaxent: Adapting species distribution modeling to spatial data |
title |
spatialMaxent: Adapting species distribution modeling to spatial data |
title_full |
spatialMaxent: Adapting species distribution modeling to spatial data |
title_fullStr |
spatialMaxent: Adapting species distribution modeling to spatial data |
title_full_unstemmed |
spatialMaxent: Adapting species distribution modeling to spatial data |
title_short |
spatialMaxent: Adapting species distribution modeling to spatial data |
title_sort | spatialmaxent: adapting species distribution modeling to spatial data |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10594137/ https://www.ncbi.nlm.nih.gov/pubmed/37881225 http://dx.doi.org/10.1002/ece3.10635 |
work_keys_str_mv | AT baldlisa spatialmaxentadaptingspeciesdistributionmodelingtospatialdata AT gottwaldjannis spatialmaxentadaptingspeciesdistributionmodelingtospatialdata AT zeussdirk spatialmaxentadaptingspeciesdistributionmodelingtospatialdata |