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spatialMaxent: Adapting species distribution modeling to spatial data

Conventional practices in species distribution modeling lack predictive power when the spatial structure of data is not taken into account. However, choosing a modeling approach that accounts for overfitting during model training can improve predictive performance on spatially separated test data, l...

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Detalles Bibliográficos
Autores principales: Bald, Lisa, Gottwald, Jannis, Zeuss, Dirk
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10594137/
https://www.ncbi.nlm.nih.gov/pubmed/37881225
http://dx.doi.org/10.1002/ece3.10635
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author Bald, Lisa
Gottwald, Jannis
Zeuss, Dirk
author_facet Bald, Lisa
Gottwald, Jannis
Zeuss, Dirk
author_sort Bald, Lisa
collection PubMed
description Conventional practices in species distribution modeling lack predictive power when the spatial structure of data is not taken into account. However, choosing a modeling approach that accounts for overfitting during model training can improve predictive performance on spatially separated test data, leading to more reliable models. This study introduces spatialMaxent (https://github.com/envima/spatialMaxent), a software that combines state‐of‐the‐art spatial modeling techniques with the popular species distribution modeling software Maxent. It includes forward‐variable‐selection, forward‐feature‐selection, and regularization‐multiplier tuning based on spatial cross‐validation, which enables addressing overfitting during model training by considering the impact of spatial dependency in the training data. We assessed the performance of spatialMaxent using the National Center for Ecological Analysis and Synthesis dataset, which contains over 200 anonymized species across six regions worldwide. Our results show that spatialMaxent outperforms both conventional Maxent and models optimized according to literature recommendations without using a spatial tuning strategy in 80 percent of the cases. spatialMaxent is user‐friendly and easily accessible to researchers, government authorities, and conservation practitioners. Therefore, it has the potential to play an important role in addressing pressing challenges of biodiversity conservation.
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spelling pubmed-105941372023-10-25 spatialMaxent: Adapting species distribution modeling to spatial data Bald, Lisa Gottwald, Jannis Zeuss, Dirk Ecol Evol Research Articles Conventional practices in species distribution modeling lack predictive power when the spatial structure of data is not taken into account. However, choosing a modeling approach that accounts for overfitting during model training can improve predictive performance on spatially separated test data, leading to more reliable models. This study introduces spatialMaxent (https://github.com/envima/spatialMaxent), a software that combines state‐of‐the‐art spatial modeling techniques with the popular species distribution modeling software Maxent. It includes forward‐variable‐selection, forward‐feature‐selection, and regularization‐multiplier tuning based on spatial cross‐validation, which enables addressing overfitting during model training by considering the impact of spatial dependency in the training data. We assessed the performance of spatialMaxent using the National Center for Ecological Analysis and Synthesis dataset, which contains over 200 anonymized species across six regions worldwide. Our results show that spatialMaxent outperforms both conventional Maxent and models optimized according to literature recommendations without using a spatial tuning strategy in 80 percent of the cases. spatialMaxent is user‐friendly and easily accessible to researchers, government authorities, and conservation practitioners. Therefore, it has the potential to play an important role in addressing pressing challenges of biodiversity conservation. John Wiley and Sons Inc. 2023-10-24 /pmc/articles/PMC10594137/ /pubmed/37881225 http://dx.doi.org/10.1002/ece3.10635 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Bald, Lisa
Gottwald, Jannis
Zeuss, Dirk
spatialMaxent: Adapting species distribution modeling to spatial data
title spatialMaxent: Adapting species distribution modeling to spatial data
title_full spatialMaxent: Adapting species distribution modeling to spatial data
title_fullStr spatialMaxent: Adapting species distribution modeling to spatial data
title_full_unstemmed spatialMaxent: Adapting species distribution modeling to spatial data
title_short spatialMaxent: Adapting species distribution modeling to spatial data
title_sort spatialmaxent: adapting species distribution modeling to spatial data
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10594137/
https://www.ncbi.nlm.nih.gov/pubmed/37881225
http://dx.doi.org/10.1002/ece3.10635
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