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Uncertainty-inspired open set learning for retinal anomaly identification

Failure to recognize samples from the classes unseen during training is a major limitation of artificial intelligence in the real-world implementation for recognition and classification of retinal anomalies. We establish an uncertainty-inspired open set (UIOS) model, which is trained with fundus ima...

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Autores principales: Wang, Meng, Lin, Tian, Wang, Lianyu, Lin, Aidi, Zou, Ke, Xu, Xinxing, Zhou, Yi, Peng, Yuanyuan, Meng, Qingquan, Qian, Yiming, Deng, Guoyao, Wu, Zhiqun, Chen, Junhong, Lin, Jianhong, Zhang, Mingzhi, Zhu, Weifang, Zhang, Changqing, Zhang, Daoqiang, Goh, Rick Siow Mong, Liu, Yong, Pang, Chi Pui, Chen, Xinjian, Chen, Haoyu, Fu, Huazhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598011/
https://www.ncbi.nlm.nih.gov/pubmed/37875484
http://dx.doi.org/10.1038/s41467-023-42444-7
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author Wang, Meng
Lin, Tian
Wang, Lianyu
Lin, Aidi
Zou, Ke
Xu, Xinxing
Zhou, Yi
Peng, Yuanyuan
Meng, Qingquan
Qian, Yiming
Deng, Guoyao
Wu, Zhiqun
Chen, Junhong
Lin, Jianhong
Zhang, Mingzhi
Zhu, Weifang
Zhang, Changqing
Zhang, Daoqiang
Goh, Rick Siow Mong
Liu, Yong
Pang, Chi Pui
Chen, Xinjian
Chen, Haoyu
Fu, Huazhu
author_facet Wang, Meng
Lin, Tian
Wang, Lianyu
Lin, Aidi
Zou, Ke
Xu, Xinxing
Zhou, Yi
Peng, Yuanyuan
Meng, Qingquan
Qian, Yiming
Deng, Guoyao
Wu, Zhiqun
Chen, Junhong
Lin, Jianhong
Zhang, Mingzhi
Zhu, Weifang
Zhang, Changqing
Zhang, Daoqiang
Goh, Rick Siow Mong
Liu, Yong
Pang, Chi Pui
Chen, Xinjian
Chen, Haoyu
Fu, Huazhu
author_sort Wang, Meng
collection PubMed
description Failure to recognize samples from the classes unseen during training is a major limitation of artificial intelligence in the real-world implementation for recognition and classification of retinal anomalies. We establish an uncertainty-inspired open set (UIOS) model, which is trained with fundus images of 9 retinal conditions. Besides assessing the probability of each category, UIOS also calculates an uncertainty score to express its confidence. Our UIOS model with thresholding strategy achieves an F1 score of 99.55%, 97.01% and 91.91% for the internal testing set, external target categories (TC)-JSIEC dataset and TC-unseen testing set, respectively, compared to the F1 score of 92.20%, 80.69% and 64.74% by the standard AI model. Furthermore, UIOS correctly predicts high uncertainty scores, which would prompt the need for a manual check in the datasets of non-target categories retinal diseases, low-quality fundus images, and non-fundus images. UIOS provides a robust method for real-world screening of retinal anomalies.
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spelling pubmed-105980112023-10-26 Uncertainty-inspired open set learning for retinal anomaly identification Wang, Meng Lin, Tian Wang, Lianyu Lin, Aidi Zou, Ke Xu, Xinxing Zhou, Yi Peng, Yuanyuan Meng, Qingquan Qian, Yiming Deng, Guoyao Wu, Zhiqun Chen, Junhong Lin, Jianhong Zhang, Mingzhi Zhu, Weifang Zhang, Changqing Zhang, Daoqiang Goh, Rick Siow Mong Liu, Yong Pang, Chi Pui Chen, Xinjian Chen, Haoyu Fu, Huazhu Nat Commun Article Failure to recognize samples from the classes unseen during training is a major limitation of artificial intelligence in the real-world implementation for recognition and classification of retinal anomalies. We establish an uncertainty-inspired open set (UIOS) model, which is trained with fundus images of 9 retinal conditions. Besides assessing the probability of each category, UIOS also calculates an uncertainty score to express its confidence. Our UIOS model with thresholding strategy achieves an F1 score of 99.55%, 97.01% and 91.91% for the internal testing set, external target categories (TC)-JSIEC dataset and TC-unseen testing set, respectively, compared to the F1 score of 92.20%, 80.69% and 64.74% by the standard AI model. Furthermore, UIOS correctly predicts high uncertainty scores, which would prompt the need for a manual check in the datasets of non-target categories retinal diseases, low-quality fundus images, and non-fundus images. UIOS provides a robust method for real-world screening of retinal anomalies. Nature Publishing Group UK 2023-10-24 /pmc/articles/PMC10598011/ /pubmed/37875484 http://dx.doi.org/10.1038/s41467-023-42444-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wang, Meng
Lin, Tian
Wang, Lianyu
Lin, Aidi
Zou, Ke
Xu, Xinxing
Zhou, Yi
Peng, Yuanyuan
Meng, Qingquan
Qian, Yiming
Deng, Guoyao
Wu, Zhiqun
Chen, Junhong
Lin, Jianhong
Zhang, Mingzhi
Zhu, Weifang
Zhang, Changqing
Zhang, Daoqiang
Goh, Rick Siow Mong
Liu, Yong
Pang, Chi Pui
Chen, Xinjian
Chen, Haoyu
Fu, Huazhu
Uncertainty-inspired open set learning for retinal anomaly identification
title Uncertainty-inspired open set learning for retinal anomaly identification
title_full Uncertainty-inspired open set learning for retinal anomaly identification
title_fullStr Uncertainty-inspired open set learning for retinal anomaly identification
title_full_unstemmed Uncertainty-inspired open set learning for retinal anomaly identification
title_short Uncertainty-inspired open set learning for retinal anomaly identification
title_sort uncertainty-inspired open set learning for retinal anomaly identification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598011/
https://www.ncbi.nlm.nih.gov/pubmed/37875484
http://dx.doi.org/10.1038/s41467-023-42444-7
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