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Ensemble learning-based approach for automatic classification of termite mushrooms
Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598762/ https://www.ncbi.nlm.nih.gov/pubmed/37886685 http://dx.doi.org/10.3389/fgene.2023.1208695 |
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author | Duong, Thi Kim Chi Tran, Van Lang Nguyen, The Bao Nguyen, Thi Thuy Ho, Ngoc Trung Kien Nguyen, Thanh Q. |
author_facet | Duong, Thi Kim Chi Tran, Van Lang Nguyen, The Bao Nguyen, Thi Thuy Ho, Ngoc Trung Kien Nguyen, Thanh Q. |
author_sort | Duong, Thi Kim Chi |
collection | PubMed |
description | Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method for classifying termite mushroom species. The method utilizes Gradient Boosting machine learning techniques and sequence encoding on the Internal Transcribed Spacer (ITS) gene dataset to construct a machine learning model for identifying termite mushroom species. The model is trained using ITS sequences obtained from the National Center for Biotechnology Information (NCBI) and the Barcode of Life Data Systems (BOLD). Ensemble learning techniques are applied to classify termite mushroom species. The proposed model achieves good results on the test dataset, with an accuracy of 0.91 and an average AUCROC value of 0.99. To validate the model, eight ITS sequences collected from termite mushroom samples in An Linh commune, Phu Giao district, Binh Duong province, Vietnam were used as the test data. The results show consistent species identification with predictions from the NCBI BLAST software. The results of species identification were consistent with the NCBI BLAST prediction software. This machine-learning model shows promise as an automatic solution for classifying termite mushroom species. It can help researchers better understand the local growth of these termite mushrooms and develop conservation plans for this rare and valuable plant resource. |
format | Online Article Text |
id | pubmed-10598762 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-105987622023-10-26 Ensemble learning-based approach for automatic classification of termite mushrooms Duong, Thi Kim Chi Tran, Van Lang Nguyen, The Bao Nguyen, Thi Thuy Ho, Ngoc Trung Kien Nguyen, Thanh Q. Front Genet Genetics Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method for classifying termite mushroom species. The method utilizes Gradient Boosting machine learning techniques and sequence encoding on the Internal Transcribed Spacer (ITS) gene dataset to construct a machine learning model for identifying termite mushroom species. The model is trained using ITS sequences obtained from the National Center for Biotechnology Information (NCBI) and the Barcode of Life Data Systems (BOLD). Ensemble learning techniques are applied to classify termite mushroom species. The proposed model achieves good results on the test dataset, with an accuracy of 0.91 and an average AUCROC value of 0.99. To validate the model, eight ITS sequences collected from termite mushroom samples in An Linh commune, Phu Giao district, Binh Duong province, Vietnam were used as the test data. The results show consistent species identification with predictions from the NCBI BLAST software. The results of species identification were consistent with the NCBI BLAST prediction software. This machine-learning model shows promise as an automatic solution for classifying termite mushroom species. It can help researchers better understand the local growth of these termite mushrooms and develop conservation plans for this rare and valuable plant resource. Frontiers Media S.A. 2023-10-11 /pmc/articles/PMC10598762/ /pubmed/37886685 http://dx.doi.org/10.3389/fgene.2023.1208695 Text en Copyright © 2023 Duong, Tran, Nguyen, Nguyen, Ho and Nguyen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Duong, Thi Kim Chi Tran, Van Lang Nguyen, The Bao Nguyen, Thi Thuy Ho, Ngoc Trung Kien Nguyen, Thanh Q. Ensemble learning-based approach for automatic classification of termite mushrooms |
title | Ensemble learning-based approach for automatic classification of termite mushrooms |
title_full | Ensemble learning-based approach for automatic classification of termite mushrooms |
title_fullStr | Ensemble learning-based approach for automatic classification of termite mushrooms |
title_full_unstemmed | Ensemble learning-based approach for automatic classification of termite mushrooms |
title_short | Ensemble learning-based approach for automatic classification of termite mushrooms |
title_sort | ensemble learning-based approach for automatic classification of termite mushrooms |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598762/ https://www.ncbi.nlm.nih.gov/pubmed/37886685 http://dx.doi.org/10.3389/fgene.2023.1208695 |
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