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Ensemble learning-based approach for automatic classification of termite mushrooms

Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method...

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Autores principales: Duong, Thi Kim Chi, Tran, Van Lang, Nguyen, The Bao, Nguyen, Thi Thuy, Ho, Ngoc Trung Kien, Nguyen, Thanh Q.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598762/
https://www.ncbi.nlm.nih.gov/pubmed/37886685
http://dx.doi.org/10.3389/fgene.2023.1208695
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author Duong, Thi Kim Chi
Tran, Van Lang
Nguyen, The Bao
Nguyen, Thi Thuy
Ho, Ngoc Trung Kien
Nguyen, Thanh Q.
author_facet Duong, Thi Kim Chi
Tran, Van Lang
Nguyen, The Bao
Nguyen, Thi Thuy
Ho, Ngoc Trung Kien
Nguyen, Thanh Q.
author_sort Duong, Thi Kim Chi
collection PubMed
description Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method for classifying termite mushroom species. The method utilizes Gradient Boosting machine learning techniques and sequence encoding on the Internal Transcribed Spacer (ITS) gene dataset to construct a machine learning model for identifying termite mushroom species. The model is trained using ITS sequences obtained from the National Center for Biotechnology Information (NCBI) and the Barcode of Life Data Systems (BOLD). Ensemble learning techniques are applied to classify termite mushroom species. The proposed model achieves good results on the test dataset, with an accuracy of 0.91 and an average AUCROC value of 0.99. To validate the model, eight ITS sequences collected from termite mushroom samples in An Linh commune, Phu Giao district, Binh Duong province, Vietnam were used as the test data. The results show consistent species identification with predictions from the NCBI BLAST software. The results of species identification were consistent with the NCBI BLAST prediction software. This machine-learning model shows promise as an automatic solution for classifying termite mushroom species. It can help researchers better understand the local growth of these termite mushrooms and develop conservation plans for this rare and valuable plant resource.
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spelling pubmed-105987622023-10-26 Ensemble learning-based approach for automatic classification of termite mushrooms Duong, Thi Kim Chi Tran, Van Lang Nguyen, The Bao Nguyen, Thi Thuy Ho, Ngoc Trung Kien Nguyen, Thanh Q. Front Genet Genetics Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method for classifying termite mushroom species. The method utilizes Gradient Boosting machine learning techniques and sequence encoding on the Internal Transcribed Spacer (ITS) gene dataset to construct a machine learning model for identifying termite mushroom species. The model is trained using ITS sequences obtained from the National Center for Biotechnology Information (NCBI) and the Barcode of Life Data Systems (BOLD). Ensemble learning techniques are applied to classify termite mushroom species. The proposed model achieves good results on the test dataset, with an accuracy of 0.91 and an average AUCROC value of 0.99. To validate the model, eight ITS sequences collected from termite mushroom samples in An Linh commune, Phu Giao district, Binh Duong province, Vietnam were used as the test data. The results show consistent species identification with predictions from the NCBI BLAST software. The results of species identification were consistent with the NCBI BLAST prediction software. This machine-learning model shows promise as an automatic solution for classifying termite mushroom species. It can help researchers better understand the local growth of these termite mushrooms and develop conservation plans for this rare and valuable plant resource. Frontiers Media S.A. 2023-10-11 /pmc/articles/PMC10598762/ /pubmed/37886685 http://dx.doi.org/10.3389/fgene.2023.1208695 Text en Copyright © 2023 Duong, Tran, Nguyen, Nguyen, Ho and Nguyen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Duong, Thi Kim Chi
Tran, Van Lang
Nguyen, The Bao
Nguyen, Thi Thuy
Ho, Ngoc Trung Kien
Nguyen, Thanh Q.
Ensemble learning-based approach for automatic classification of termite mushrooms
title Ensemble learning-based approach for automatic classification of termite mushrooms
title_full Ensemble learning-based approach for automatic classification of termite mushrooms
title_fullStr Ensemble learning-based approach for automatic classification of termite mushrooms
title_full_unstemmed Ensemble learning-based approach for automatic classification of termite mushrooms
title_short Ensemble learning-based approach for automatic classification of termite mushrooms
title_sort ensemble learning-based approach for automatic classification of termite mushrooms
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598762/
https://www.ncbi.nlm.nih.gov/pubmed/37886685
http://dx.doi.org/10.3389/fgene.2023.1208695
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