Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach

Resistance genes (R genes) are a class of genes that are immune to a wide range of diseases and pests. In planta, NLR genes are essential components of the innate immune system. Currently, genes belonging to NLR family have been found in a number of plant species, but little is known in peach. Here,...

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Autores principales: Yu, Haixiang, Wu, Xuelian, Liang, Jiahui, Han, Ziying, Xiao, Yuansong, Du, Hao, Liu, Yihua, Guo, Jian, Peng, Futian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598982/
https://www.ncbi.nlm.nih.gov/pubmed/37880593
http://dx.doi.org/10.1186/s12870-023-04474-7
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author Yu, Haixiang
Wu, Xuelian
Liang, Jiahui
Han, Ziying
Xiao, Yuansong
Du, Hao
Liu, Yihua
Guo, Jian
Peng, Futian
author_facet Yu, Haixiang
Wu, Xuelian
Liang, Jiahui
Han, Ziying
Xiao, Yuansong
Du, Hao
Liu, Yihua
Guo, Jian
Peng, Futian
author_sort Yu, Haixiang
collection PubMed
description Resistance genes (R genes) are a class of genes that are immune to a wide range of diseases and pests. In planta, NLR genes are essential components of the innate immune system. Currently, genes belonging to NLR family have been found in a number of plant species, but little is known in peach. Here, 286 NLR genes were identified on peach genome by using their homologous genes in Arabidopsis thaliana as queries. These 286 NLR genes contained at least one NBS domain and LRR domain. Phylogenetic and N-terminal domain analysis showed that these NLRs could be separated into four subfamilies (I-IV) and their promoters contained many cis-elements in response to defense and phytohormones. In addition, transcriptome analysis showed that 22 NLR genes were up-regulated after infected by Green Peach Aphid (GPA), and showed different expression patterns. This study clarified the NLR gene family and their potential functions in aphid resistance process. The candidate NLR genes might be useful in illustrating the mechanism of aphid resistance in peach. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-023-04474-7.
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spelling pubmed-105989822023-10-26 Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach Yu, Haixiang Wu, Xuelian Liang, Jiahui Han, Ziying Xiao, Yuansong Du, Hao Liu, Yihua Guo, Jian Peng, Futian BMC Plant Biol Research Resistance genes (R genes) are a class of genes that are immune to a wide range of diseases and pests. In planta, NLR genes are essential components of the innate immune system. Currently, genes belonging to NLR family have been found in a number of plant species, but little is known in peach. Here, 286 NLR genes were identified on peach genome by using their homologous genes in Arabidopsis thaliana as queries. These 286 NLR genes contained at least one NBS domain and LRR domain. Phylogenetic and N-terminal domain analysis showed that these NLRs could be separated into four subfamilies (I-IV) and their promoters contained many cis-elements in response to defense and phytohormones. In addition, transcriptome analysis showed that 22 NLR genes were up-regulated after infected by Green Peach Aphid (GPA), and showed different expression patterns. This study clarified the NLR gene family and their potential functions in aphid resistance process. The candidate NLR genes might be useful in illustrating the mechanism of aphid resistance in peach. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-023-04474-7. BioMed Central 2023-10-25 /pmc/articles/PMC10598982/ /pubmed/37880593 http://dx.doi.org/10.1186/s12870-023-04474-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Yu, Haixiang
Wu, Xuelian
Liang, Jiahui
Han, Ziying
Xiao, Yuansong
Du, Hao
Liu, Yihua
Guo, Jian
Peng, Futian
Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach
title Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach
title_full Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach
title_fullStr Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach
title_full_unstemmed Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach
title_short Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach
title_sort genome-wide identification of nucleotide-binding domain leucine-rich repeat (nlr) genes and their association with green peach aphid (myzus persicae) resistance in peach
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10598982/
https://www.ncbi.nlm.nih.gov/pubmed/37880593
http://dx.doi.org/10.1186/s12870-023-04474-7
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