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GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis
Background: Gliomas are the most frequently diagnosed primary brain tumors, and are associated with multiple molecular aberrations during their development and progression. GPR37 is an orphan G protein-coupled receptor (GPCR) that is implicated in different physiological pathways in the brain, and h...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10599758/ https://www.ncbi.nlm.nih.gov/pubmed/37837549 http://dx.doi.org/10.18632/aging.205063 |
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author | Liang, Kairong Guo, Zhaoxiong Zhang, Shizhen Chen, Danmin Zou, Renheng Weng, Yuhao Peng, Chengxiang Xu, Zhichao Zhang, Jingbai Liu, Xiaorui Pang, Xiao Ji, Yunxiang Liao, Degui Lai, Miaoling Peng, Huaidong Ke, Yanbin Wang, Zhaotao Wang, Yezhong |
author_facet | Liang, Kairong Guo, Zhaoxiong Zhang, Shizhen Chen, Danmin Zou, Renheng Weng, Yuhao Peng, Chengxiang Xu, Zhichao Zhang, Jingbai Liu, Xiaorui Pang, Xiao Ji, Yunxiang Liao, Degui Lai, Miaoling Peng, Huaidong Ke, Yanbin Wang, Zhaotao Wang, Yezhong |
author_sort | Liang, Kairong |
collection | PubMed |
description | Background: Gliomas are the most frequently diagnosed primary brain tumors, and are associated with multiple molecular aberrations during their development and progression. GPR37 is an orphan G protein-coupled receptor (GPCR) that is implicated in different physiological pathways in the brain, and has been linked to various malignancies. The aim of this study was to explore the relationship between GPR37 gene expression and the clinicopathological factors, patient prognosis, tumor-infiltrating immune cell signature GSEA and methylation levels in glioma. Methods: We explored the diagnostic value, clinical relevance, and molecular function of GPR37 in glioma using TCGA, STRING, cBioPortal, Tumor Immunity Estimation Resource (TIMER) database and MethSurv databases. Besides, the "ssGSEA" algorithm was conducted to estimate immune cells infiltration abundance, with 'ggplot2' package visualizing the results. Immunohistochemical staining of clinical samples were used to verify the speculations of bioinformatics analysis. Results: GPR37 expression was significantly higher in the glioma tissues compared to the normal brain tissues, and was linked to poor prognosis. Functional annotation of GPR37 showed enrichment of ether lipid metabolism, fat digestion and absorption, and histidine metabolism. In addition, GSEA showed that GPR37 was positively correlated to the positive regulation of macrophage derived foam cell differentiation, negative regulation of T cell receptor signaling pathway, neuroactive ligand receptor interaction, calcium signaling pathway, and negatively associated with immunoglobulin complex, immunoglobulin complex circulating, ribosome and spliceosome mediated by circulating immunoglobulin etc. TIMER2.0 and ssGSEA showed that GPR37 expression was significantly associated with the infiltration of T cells, CD8 T cell, eosinophils, macrophages, neutrophils, NK CD56(dim) cells, NK cells, plasmacytoid DCs (pDCs), T helper cells and T effector memory (Tem) cells. In addition, high GPR37 expression was positively correlated with increased infiltration of M2 macrophages, which in turn was associated with poor prognosis. Furthermore, GPR37 was positively correlated with various immune checkpoints (ICPs). Finally, hypomethylation of the GPR37 promoter was associated with its high expression levels and poor prognosis in glioma. Conclusion: GPR37 had diagnostic and prognostic value in glioma. The possible biological mechanisms of GPR37 provide novel insights into the clinical diagnosis and treatment of glioma. |
format | Online Article Text |
id | pubmed-10599758 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-105997582023-10-26 GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis Liang, Kairong Guo, Zhaoxiong Zhang, Shizhen Chen, Danmin Zou, Renheng Weng, Yuhao Peng, Chengxiang Xu, Zhichao Zhang, Jingbai Liu, Xiaorui Pang, Xiao Ji, Yunxiang Liao, Degui Lai, Miaoling Peng, Huaidong Ke, Yanbin Wang, Zhaotao Wang, Yezhong Aging (Albany NY) Research Paper Background: Gliomas are the most frequently diagnosed primary brain tumors, and are associated with multiple molecular aberrations during their development and progression. GPR37 is an orphan G protein-coupled receptor (GPCR) that is implicated in different physiological pathways in the brain, and has been linked to various malignancies. The aim of this study was to explore the relationship between GPR37 gene expression and the clinicopathological factors, patient prognosis, tumor-infiltrating immune cell signature GSEA and methylation levels in glioma. Methods: We explored the diagnostic value, clinical relevance, and molecular function of GPR37 in glioma using TCGA, STRING, cBioPortal, Tumor Immunity Estimation Resource (TIMER) database and MethSurv databases. Besides, the "ssGSEA" algorithm was conducted to estimate immune cells infiltration abundance, with 'ggplot2' package visualizing the results. Immunohistochemical staining of clinical samples were used to verify the speculations of bioinformatics analysis. Results: GPR37 expression was significantly higher in the glioma tissues compared to the normal brain tissues, and was linked to poor prognosis. Functional annotation of GPR37 showed enrichment of ether lipid metabolism, fat digestion and absorption, and histidine metabolism. In addition, GSEA showed that GPR37 was positively correlated to the positive regulation of macrophage derived foam cell differentiation, negative regulation of T cell receptor signaling pathway, neuroactive ligand receptor interaction, calcium signaling pathway, and negatively associated with immunoglobulin complex, immunoglobulin complex circulating, ribosome and spliceosome mediated by circulating immunoglobulin etc. TIMER2.0 and ssGSEA showed that GPR37 expression was significantly associated with the infiltration of T cells, CD8 T cell, eosinophils, macrophages, neutrophils, NK CD56(dim) cells, NK cells, plasmacytoid DCs (pDCs), T helper cells and T effector memory (Tem) cells. In addition, high GPR37 expression was positively correlated with increased infiltration of M2 macrophages, which in turn was associated with poor prognosis. Furthermore, GPR37 was positively correlated with various immune checkpoints (ICPs). Finally, hypomethylation of the GPR37 promoter was associated with its high expression levels and poor prognosis in glioma. Conclusion: GPR37 had diagnostic and prognostic value in glioma. The possible biological mechanisms of GPR37 provide novel insights into the clinical diagnosis and treatment of glioma. Impact Journals 2023-10-13 /pmc/articles/PMC10599758/ /pubmed/37837549 http://dx.doi.org/10.18632/aging.205063 Text en Copyright: © 2023 Liang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Liang, Kairong Guo, Zhaoxiong Zhang, Shizhen Chen, Danmin Zou, Renheng Weng, Yuhao Peng, Chengxiang Xu, Zhichao Zhang, Jingbai Liu, Xiaorui Pang, Xiao Ji, Yunxiang Liao, Degui Lai, Miaoling Peng, Huaidong Ke, Yanbin Wang, Zhaotao Wang, Yezhong GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
title | GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
title_full | GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
title_fullStr | GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
title_full_unstemmed | GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
title_short | GPR37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
title_sort | gpr37 expression as a prognostic marker in gliomas: a bioinformatics-based analysis |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10599758/ https://www.ncbi.nlm.nih.gov/pubmed/37837549 http://dx.doi.org/10.18632/aging.205063 |
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