Cargando…
The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator
BACKGROUND: The Chinese praying mantis, Tenodera sinensis (Saussure), is a carnivorous insect that preys on a variety of arthropods and small vertebrates, including pest species. Several studies have been conducted to understand its behavior and physiology. However, there is limited knowledge about...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10600911/ https://www.ncbi.nlm.nih.gov/pubmed/37882605 http://dx.doi.org/10.1093/gigascience/giad090 |
_version_ | 1785126089218064384 |
---|---|
author | Yuan, Ruizhong Zheng, Boying Li, Zekai Ma, Xingzhou Shu, Xiaohan Qu, Qiuyu Ye, Xiqian Li, Sheng Tang, Pu Chen, Xuexin |
author_facet | Yuan, Ruizhong Zheng, Boying Li, Zekai Ma, Xingzhou Shu, Xiaohan Qu, Qiuyu Ye, Xiqian Li, Sheng Tang, Pu Chen, Xuexin |
author_sort | Yuan, Ruizhong |
collection | PubMed |
description | BACKGROUND: The Chinese praying mantis, Tenodera sinensis (Saussure), is a carnivorous insect that preys on a variety of arthropods and small vertebrates, including pest species. Several studies have been conducted to understand its behavior and physiology. However, there is limited knowledge about the genetic information underlying its genome evolution, digestive demands, and predatory behaviors. FINDINGS: Here we have assembled the chromosome-level genome of T. sinensis, representing the first sequenced genome of the family Mantidae, with a genome size of 2.54 Gb and scaffold N50 of 174.78 Mb. Our analyses revealed that 98.6% of BUSCO genes are present, resulting in a well-annotated assembly compared to other insect genomes, containing 25,022 genes. The reconstructed phylogenetic analysis showed the expected topology placing the praying mantis in an appropriate position. Analysis of transposon elements suggested the Gypsy/Dirs family, which belongs to long terminal repeat (LTR) transposons, may be a key factor resulting in the larger genome size. The genome shows expansions in several digestion and detoxification associated gene families, including trypsin and glycosyl hydrolase (GH) genes, ATP-binding cassette (ABC) transporter, and carboxylesterase (CarE), reflecting the possible genomic basis of digestive demands. Furthermore, we have found 1 ultraviolet-sensitive opsin and 2 long-wavelength-sensitive (LWS) opsins, emphasizing the core role of LWS opsins in regulating predatory behaviors. CONCLUSIONS: The high-quality genome assembly of the praying mantis provides a valuable repository for studying the evolutionary patterns of the mantis genomes and the gene expression profiles of insect predators. |
format | Online Article Text |
id | pubmed-10600911 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-106009112023-10-27 The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator Yuan, Ruizhong Zheng, Boying Li, Zekai Ma, Xingzhou Shu, Xiaohan Qu, Qiuyu Ye, Xiqian Li, Sheng Tang, Pu Chen, Xuexin Gigascience Data Note BACKGROUND: The Chinese praying mantis, Tenodera sinensis (Saussure), is a carnivorous insect that preys on a variety of arthropods and small vertebrates, including pest species. Several studies have been conducted to understand its behavior and physiology. However, there is limited knowledge about the genetic information underlying its genome evolution, digestive demands, and predatory behaviors. FINDINGS: Here we have assembled the chromosome-level genome of T. sinensis, representing the first sequenced genome of the family Mantidae, with a genome size of 2.54 Gb and scaffold N50 of 174.78 Mb. Our analyses revealed that 98.6% of BUSCO genes are present, resulting in a well-annotated assembly compared to other insect genomes, containing 25,022 genes. The reconstructed phylogenetic analysis showed the expected topology placing the praying mantis in an appropriate position. Analysis of transposon elements suggested the Gypsy/Dirs family, which belongs to long terminal repeat (LTR) transposons, may be a key factor resulting in the larger genome size. The genome shows expansions in several digestion and detoxification associated gene families, including trypsin and glycosyl hydrolase (GH) genes, ATP-binding cassette (ABC) transporter, and carboxylesterase (CarE), reflecting the possible genomic basis of digestive demands. Furthermore, we have found 1 ultraviolet-sensitive opsin and 2 long-wavelength-sensitive (LWS) opsins, emphasizing the core role of LWS opsins in regulating predatory behaviors. CONCLUSIONS: The high-quality genome assembly of the praying mantis provides a valuable repository for studying the evolutionary patterns of the mantis genomes and the gene expression profiles of insect predators. Oxford University Press 2023-10-26 /pmc/articles/PMC10600911/ /pubmed/37882605 http://dx.doi.org/10.1093/gigascience/giad090 Text en © The Author(s) 2023. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Note Yuan, Ruizhong Zheng, Boying Li, Zekai Ma, Xingzhou Shu, Xiaohan Qu, Qiuyu Ye, Xiqian Li, Sheng Tang, Pu Chen, Xuexin The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator |
title | The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator |
title_full | The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator |
title_fullStr | The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator |
title_full_unstemmed | The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator |
title_short | The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator |
title_sort | chromosome-level genome of chinese praying mantis tenodera sinensis (mantodea: mantidae) reveals its biology as a predator |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10600911/ https://www.ncbi.nlm.nih.gov/pubmed/37882605 http://dx.doi.org/10.1093/gigascience/giad090 |
work_keys_str_mv | AT yuanruizhong thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT zhengboying thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT lizekai thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT maxingzhou thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT shuxiaohan thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT quqiuyu thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT yexiqian thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT lisheng thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT tangpu thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT chenxuexin thechromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT yuanruizhong chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT zhengboying chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT lizekai chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT maxingzhou chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT shuxiaohan chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT quqiuyu chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT yexiqian chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT lisheng chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT tangpu chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator AT chenxuexin chromosomelevelgenomeofchineseprayingmantistenoderasinensismantodeamantidaerevealsitsbiologyasapredator |