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The Quartet Data Portal: integration of community-wide resources for multiomics quality control
The Quartet Data Portal facilitates community access to well-characterized reference materials, reference datasets, and related resources established based on a family of four individuals with identical twins from the Quartet Project. Users can request DNA, RNA, protein, and metabolite reference mat...
| Autores principales: | , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2023
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601216/ https://www.ncbi.nlm.nih.gov/pubmed/37884999 http://dx.doi.org/10.1186/s13059-023-03091-9 |
| _version_ | 1785126151070416896 |
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| author | Yang, Jingcheng Liu, Yaqing Shang, Jun Chen, Qiaochu Chen, Qingwang Ren, Luyao Zhang, Naixin Yu, Ying Li, Zhihui Song, Yueqiang Yang, Shengpeng Scherer, Andreas Tong, Weida Hong, Huixiao Xiao, Wenming Shi, Leming Zheng, Yuanting |
| author_facet | Yang, Jingcheng Liu, Yaqing Shang, Jun Chen, Qiaochu Chen, Qingwang Ren, Luyao Zhang, Naixin Yu, Ying Li, Zhihui Song, Yueqiang Yang, Shengpeng Scherer, Andreas Tong, Weida Hong, Huixiao Xiao, Wenming Shi, Leming Zheng, Yuanting |
| author_sort | Yang, Jingcheng |
| collection | PubMed |
| description | The Quartet Data Portal facilitates community access to well-characterized reference materials, reference datasets, and related resources established based on a family of four individuals with identical twins from the Quartet Project. Users can request DNA, RNA, protein, and metabolite reference materials, as well as datasets generated across omics, platforms, labs, protocols, and batches. Reproducible analysis tools allow for objective performance assessment of user-submitted data, while interactive visualization tools support rapid exploration of reference datasets. A closed-loop “distribution-collection-evaluation-integration” workflow enables updates and integration of community-contributed multiomics data. Ultimately, this portal helps promote the advancement of reference datasets and multiomics quality control. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-023-03091-9. |
| format | Online Article Text |
| id | pubmed-10601216 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2023 |
| publisher | BioMed Central |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-106012162023-10-27 The Quartet Data Portal: integration of community-wide resources for multiomics quality control Yang, Jingcheng Liu, Yaqing Shang, Jun Chen, Qiaochu Chen, Qingwang Ren, Luyao Zhang, Naixin Yu, Ying Li, Zhihui Song, Yueqiang Yang, Shengpeng Scherer, Andreas Tong, Weida Hong, Huixiao Xiao, Wenming Shi, Leming Zheng, Yuanting Genome Biol Software The Quartet Data Portal facilitates community access to well-characterized reference materials, reference datasets, and related resources established based on a family of four individuals with identical twins from the Quartet Project. Users can request DNA, RNA, protein, and metabolite reference materials, as well as datasets generated across omics, platforms, labs, protocols, and batches. Reproducible analysis tools allow for objective performance assessment of user-submitted data, while interactive visualization tools support rapid exploration of reference datasets. A closed-loop “distribution-collection-evaluation-integration” workflow enables updates and integration of community-contributed multiomics data. Ultimately, this portal helps promote the advancement of reference datasets and multiomics quality control. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-023-03091-9. BioMed Central 2023-10-26 /pmc/articles/PMC10601216/ /pubmed/37884999 http://dx.doi.org/10.1186/s13059-023-03091-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
| spellingShingle | Software Yang, Jingcheng Liu, Yaqing Shang, Jun Chen, Qiaochu Chen, Qingwang Ren, Luyao Zhang, Naixin Yu, Ying Li, Zhihui Song, Yueqiang Yang, Shengpeng Scherer, Andreas Tong, Weida Hong, Huixiao Xiao, Wenming Shi, Leming Zheng, Yuanting The Quartet Data Portal: integration of community-wide resources for multiomics quality control |
| title | The Quartet Data Portal: integration of community-wide resources for multiomics quality control |
| title_full | The Quartet Data Portal: integration of community-wide resources for multiomics quality control |
| title_fullStr | The Quartet Data Portal: integration of community-wide resources for multiomics quality control |
| title_full_unstemmed | The Quartet Data Portal: integration of community-wide resources for multiomics quality control |
| title_short | The Quartet Data Portal: integration of community-wide resources for multiomics quality control |
| title_sort | quartet data portal: integration of community-wide resources for multiomics quality control |
| topic | Software |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601216/ https://www.ncbi.nlm.nih.gov/pubmed/37884999 http://dx.doi.org/10.1186/s13059-023-03091-9 |
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