Cargando…

Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer

BACKGROUND: Pancreatic cancer (PC) is one of the most aggressive abdominal malignancies with a poor prognosis and it is urgent to find effective biomarkers for prediction. Although BICC1 expression is related to the survival, no evidence for its role in PC development has been found. METHODS: We use...

Descripción completa

Detalles Bibliográficos
Autores principales: Meng, Feilong, Hua, Shuai, Chen, Xuedong, Meng, Nanfeng, Lan, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601354/
https://www.ncbi.nlm.nih.gov/pubmed/37880742
http://dx.doi.org/10.1186/s12920-023-01696-4
_version_ 1785126183011090432
author Meng, Feilong
Hua, Shuai
Chen, Xuedong
Meng, Nanfeng
Lan, Ting
author_facet Meng, Feilong
Hua, Shuai
Chen, Xuedong
Meng, Nanfeng
Lan, Ting
author_sort Meng, Feilong
collection PubMed
description BACKGROUND: Pancreatic cancer (PC) is one of the most aggressive abdominal malignancies with a poor prognosis and it is urgent to find effective biomarkers for prediction. Although BICC1 expression is related to the survival, no evidence for its role in PC development has been found. METHODS: We used RNA-seq data to screen for molecular markers highly associated with lymph node metastasis. The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) public databases were used to analyze the expression and prognosis of Differential Expressed Genes (DEGs) in PC. R studio was used for visualization and functional analysis. RESULTS: BicC Family RNA Binding Protein 1 (BICC1) was a lymph node metastasis-related DEGs in PC patients. Our study found that BICC1 mRNA levels in the tumor tissue were significantly higher and associated with poorer prognosis. Enrichment analysis found that BICC1 was enriched primarily in the Epithelial Mesenchymal Transition (EMT) pathway. Using the ESTIMATE and CIBERSORT algorithms, we found that BICC1 was related to immune cell infiltration. As a regulator of multiple immune checkpoints, BICC1 was also involved in PC’s immune response. CONCLUSIONS: BICC1 has the potential to be a new marker in association with lymph node metastasis as well as immune infiltration of PC. In addition to being a prognostic indicator, it may also be a potential therapeutic target.
format Online
Article
Text
id pubmed-10601354
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-106013542023-10-27 Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer Meng, Feilong Hua, Shuai Chen, Xuedong Meng, Nanfeng Lan, Ting BMC Med Genomics Research BACKGROUND: Pancreatic cancer (PC) is one of the most aggressive abdominal malignancies with a poor prognosis and it is urgent to find effective biomarkers for prediction. Although BICC1 expression is related to the survival, no evidence for its role in PC development has been found. METHODS: We used RNA-seq data to screen for molecular markers highly associated with lymph node metastasis. The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) public databases were used to analyze the expression and prognosis of Differential Expressed Genes (DEGs) in PC. R studio was used for visualization and functional analysis. RESULTS: BicC Family RNA Binding Protein 1 (BICC1) was a lymph node metastasis-related DEGs in PC patients. Our study found that BICC1 mRNA levels in the tumor tissue were significantly higher and associated with poorer prognosis. Enrichment analysis found that BICC1 was enriched primarily in the Epithelial Mesenchymal Transition (EMT) pathway. Using the ESTIMATE and CIBERSORT algorithms, we found that BICC1 was related to immune cell infiltration. As a regulator of multiple immune checkpoints, BICC1 was also involved in PC’s immune response. CONCLUSIONS: BICC1 has the potential to be a new marker in association with lymph node metastasis as well as immune infiltration of PC. In addition to being a prognostic indicator, it may also be a potential therapeutic target. BioMed Central 2023-10-25 /pmc/articles/PMC10601354/ /pubmed/37880742 http://dx.doi.org/10.1186/s12920-023-01696-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Meng, Feilong
Hua, Shuai
Chen, Xuedong
Meng, Nanfeng
Lan, Ting
Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer
title Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer
title_full Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer
title_fullStr Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer
title_full_unstemmed Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer
title_short Lymph node metastasis related gene BICC1 promotes tumor progression by promoting EMT and immune infiltration in pancreatic cancer
title_sort lymph node metastasis related gene bicc1 promotes tumor progression by promoting emt and immune infiltration in pancreatic cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601354/
https://www.ncbi.nlm.nih.gov/pubmed/37880742
http://dx.doi.org/10.1186/s12920-023-01696-4
work_keys_str_mv AT mengfeilong lymphnodemetastasisrelatedgenebicc1promotestumorprogressionbypromotingemtandimmuneinfiltrationinpancreaticcancer
AT huashuai lymphnodemetastasisrelatedgenebicc1promotestumorprogressionbypromotingemtandimmuneinfiltrationinpancreaticcancer
AT chenxuedong lymphnodemetastasisrelatedgenebicc1promotestumorprogressionbypromotingemtandimmuneinfiltrationinpancreaticcancer
AT mengnanfeng lymphnodemetastasisrelatedgenebicc1promotestumorprogressionbypromotingemtandimmuneinfiltrationinpancreaticcancer
AT lanting lymphnodemetastasisrelatedgenebicc1promotestumorprogressionbypromotingemtandimmuneinfiltrationinpancreaticcancer