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LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular Mechanics Model with Distributed Multipole-Based Electrostatic Embedding for Highly Efficient Surface Hopping Dynamics in Solution
[Image: see text] We present a theoretical framework for a hybrid linear vibronic coupling model electrostatically embedded into a molecular mechanics environment, termed the linear vibronic coupling/molecular mechanics (LVC/MM) method, for the surface hopping including arbitrary coupling (SHARC) mo...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601485/ https://www.ncbi.nlm.nih.gov/pubmed/37788824 http://dx.doi.org/10.1021/acs.jctc.3c00805 |
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author | Polonius, Severin Zhuravel, Oleksandra Bachmair, Brigitta Mai, Sebastian |
author_facet | Polonius, Severin Zhuravel, Oleksandra Bachmair, Brigitta Mai, Sebastian |
author_sort | Polonius, Severin |
collection | PubMed |
description | [Image: see text] We present a theoretical framework for a hybrid linear vibronic coupling model electrostatically embedded into a molecular mechanics environment, termed the linear vibronic coupling/molecular mechanics (LVC/MM) method, for the surface hopping including arbitrary coupling (SHARC) molecular dynamics package. Electrostatic embedding is realized through the computation of interactions between environment point charges and distributed multipole expansions (DMEs, up to quadrupoles) that represent each electronic state and transition densities in the diabatic basis. The DME parameters are obtained through a restrained electrostatic potential (RESP) fit, which we extended to yield higher-order multipoles. We also implemented in SHARC a scheme for achieving roto-translational invariance of LVC models as well as a general quantum mechanics/molecular mechanics (QM/MM) interface, an OpenMM interface, and restraining potentials for simulating liquid droplets. Using thioformaldehyde in water as a test case, we demonstrate that LVC/MM can accurately reproduce the solvation structure and energetics of rigid solutes, with errors on the order of 1–2 kcal/mol compared to a BP86/MM reference. The implementation in SHARC is shown to be very efficient, enabling the simulation of trajectories on the nanosecond time scale in a matter of days. |
format | Online Article Text |
id | pubmed-10601485 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-106014852023-10-27 LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular Mechanics Model with Distributed Multipole-Based Electrostatic Embedding for Highly Efficient Surface Hopping Dynamics in Solution Polonius, Severin Zhuravel, Oleksandra Bachmair, Brigitta Mai, Sebastian J Chem Theory Comput [Image: see text] We present a theoretical framework for a hybrid linear vibronic coupling model electrostatically embedded into a molecular mechanics environment, termed the linear vibronic coupling/molecular mechanics (LVC/MM) method, for the surface hopping including arbitrary coupling (SHARC) molecular dynamics package. Electrostatic embedding is realized through the computation of interactions between environment point charges and distributed multipole expansions (DMEs, up to quadrupoles) that represent each electronic state and transition densities in the diabatic basis. The DME parameters are obtained through a restrained electrostatic potential (RESP) fit, which we extended to yield higher-order multipoles. We also implemented in SHARC a scheme for achieving roto-translational invariance of LVC models as well as a general quantum mechanics/molecular mechanics (QM/MM) interface, an OpenMM interface, and restraining potentials for simulating liquid droplets. Using thioformaldehyde in water as a test case, we demonstrate that LVC/MM can accurately reproduce the solvation structure and energetics of rigid solutes, with errors on the order of 1–2 kcal/mol compared to a BP86/MM reference. The implementation in SHARC is shown to be very efficient, enabling the simulation of trajectories on the nanosecond time scale in a matter of days. American Chemical Society 2023-10-03 /pmc/articles/PMC10601485/ /pubmed/37788824 http://dx.doi.org/10.1021/acs.jctc.3c00805 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Polonius, Severin Zhuravel, Oleksandra Bachmair, Brigitta Mai, Sebastian LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular Mechanics Model with Distributed Multipole-Based Electrostatic Embedding for Highly Efficient Surface Hopping Dynamics in Solution |
title | LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular
Mechanics Model with Distributed Multipole-Based Electrostatic Embedding
for Highly Efficient Surface Hopping Dynamics in Solution |
title_full | LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular
Mechanics Model with Distributed Multipole-Based Electrostatic Embedding
for Highly Efficient Surface Hopping Dynamics in Solution |
title_fullStr | LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular
Mechanics Model with Distributed Multipole-Based Electrostatic Embedding
for Highly Efficient Surface Hopping Dynamics in Solution |
title_full_unstemmed | LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular
Mechanics Model with Distributed Multipole-Based Electrostatic Embedding
for Highly Efficient Surface Hopping Dynamics in Solution |
title_short | LVC/MM: A Hybrid Linear Vibronic Coupling/Molecular
Mechanics Model with Distributed Multipole-Based Electrostatic Embedding
for Highly Efficient Surface Hopping Dynamics in Solution |
title_sort | lvc/mm: a hybrid linear vibronic coupling/molecular
mechanics model with distributed multipole-based electrostatic embedding
for highly efficient surface hopping dynamics in solution |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601485/ https://www.ncbi.nlm.nih.gov/pubmed/37788824 http://dx.doi.org/10.1021/acs.jctc.3c00805 |
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