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Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents

Nature-inspired meta-heuristic algorithms are increasingly used in many disciplines to tackle challenging optimization problems. Our focus is to apply a newly proposed nature-inspired meta-heuristics algorithm called CSO-MA to solve challenging design problems in biosciences and demonstrate its flex...

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Detalles Bibliográficos
Autores principales: Cui, Elvis Han, Zhang, Zizhao, Wong, Weng Kee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Journal Experts 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602056/
https://www.ncbi.nlm.nih.gov/pubmed/37886528
http://dx.doi.org/10.21203/rs.3.rs-3389537/v1
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author Cui, Elvis Han
Zhang, Zizhao
Wong, Weng Kee
author_facet Cui, Elvis Han
Zhang, Zizhao
Wong, Weng Kee
author_sort Cui, Elvis Han
collection PubMed
description Nature-inspired meta-heuristic algorithms are increasingly used in many disciplines to tackle challenging optimization problems. Our focus is to apply a newly proposed nature-inspired meta-heuristics algorithm called CSO-MA to solve challenging design problems in biosciences and demonstrate its flexibility to find various types of optimal approximate or exact designs for nonlinear mixed models with one or several interacting factors and with or without random effects. We show that CSO-MA is efficient and can frequently outperform other algorithms either in terms of speed or accuracy. The algorithm, like other meta-heuristic algorithms, is free of technical assumptions and flexible in that it can incorporate cost structure or multiple user-specified constraints, such as, a fixed number of measurements per subject in a longitudinal study. When possible, we confirm some of the CSO-MA generated designs are optimal with theory by developing theory-based innovative plots. Our applications include searching optimal designs to estimate (i) parameters in mixed nonlinear models with correlated random effects, (ii) a function of parameters for a count model in a dose combination study, and (iii) parameters in a HIV dynamic model. In each case, we show the advantages of using a meta-heuristic approach to solve the optimization problem, and the added benefits of the generated designs.
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spelling pubmed-106020562023-10-27 Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents Cui, Elvis Han Zhang, Zizhao Wong, Weng Kee Res Sq Article Nature-inspired meta-heuristic algorithms are increasingly used in many disciplines to tackle challenging optimization problems. Our focus is to apply a newly proposed nature-inspired meta-heuristics algorithm called CSO-MA to solve challenging design problems in biosciences and demonstrate its flexibility to find various types of optimal approximate or exact designs for nonlinear mixed models with one or several interacting factors and with or without random effects. We show that CSO-MA is efficient and can frequently outperform other algorithms either in terms of speed or accuracy. The algorithm, like other meta-heuristic algorithms, is free of technical assumptions and flexible in that it can incorporate cost structure or multiple user-specified constraints, such as, a fixed number of measurements per subject in a longitudinal study. When possible, we confirm some of the CSO-MA generated designs are optimal with theory by developing theory-based innovative plots. Our applications include searching optimal designs to estimate (i) parameters in mixed nonlinear models with correlated random effects, (ii) a function of parameters for a count model in a dose combination study, and (iii) parameters in a HIV dynamic model. In each case, we show the advantages of using a meta-heuristic approach to solve the optimization problem, and the added benefits of the generated designs. American Journal Experts 2023-10-05 /pmc/articles/PMC10602056/ /pubmed/37886528 http://dx.doi.org/10.21203/rs.3.rs-3389537/v1 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) . which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Cui, Elvis Han
Zhang, Zizhao
Wong, Weng Kee
Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents
title Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents
title_full Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents
title_fullStr Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents
title_full_unstemmed Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents
title_short Optimal Designs for Nonlinear Mixed-effects Models Using Competitive Swarm Optimizer with Mutated Agents
title_sort optimal designs for nonlinear mixed-effects models using competitive swarm optimizer with mutated agents
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602056/
https://www.ncbi.nlm.nih.gov/pubmed/37886528
http://dx.doi.org/10.21203/rs.3.rs-3389537/v1
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