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Biomolecular condensates form spatially inhomogeneous network fluids

The functions of biomolecular condensates are thought to be influenced by their material properties, and these are in turn determined by the multiscale structural features within condensates. However, structural characterizations of condensates are challenging, and hence rarely reported. Here, we de...

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Autores principales: Dar, Furqan, Cohen, Samuel R., Mitrea, Diana M., Phillips, Aaron H., Nagy, Gergely, Leite, Wellington C., Stanley, Christopher B., Choi, Jeong-Mo, Kriwacki, Richard W., Pappu, Rohit V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Journal Experts 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602126/
https://www.ncbi.nlm.nih.gov/pubmed/37886520
http://dx.doi.org/10.21203/rs.3.rs-3419423/v1
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author Dar, Furqan
Cohen, Samuel R.
Mitrea, Diana M.
Phillips, Aaron H.
Nagy, Gergely
Leite, Wellington C.
Stanley, Christopher B.
Choi, Jeong-Mo
Kriwacki, Richard W.
Pappu, Rohit V.
author_facet Dar, Furqan
Cohen, Samuel R.
Mitrea, Diana M.
Phillips, Aaron H.
Nagy, Gergely
Leite, Wellington C.
Stanley, Christopher B.
Choi, Jeong-Mo
Kriwacki, Richard W.
Pappu, Rohit V.
author_sort Dar, Furqan
collection PubMed
description The functions of biomolecular condensates are thought to be influenced by their material properties, and these are in turn determined by the multiscale structural features within condensates. However, structural characterizations of condensates are challenging, and hence rarely reported. Here, we deploy a combination of small angle neutron scattering, fluorescence recovery after photobleaching, and bespoke coarse-grained molecular dynamics simulations to provide structural descriptions of model condensates that mimic nucleolar granular components (GCs). We show that facsimiles of GCs are network fluids featuring spatial inhomogeneities across hierarchies of length scales that reflect the contributions of distinct protein and peptide domains. The network-like inhomogeneous organization is characterized by a coexistence of liquid- and gas-like macromolecular densities that engenders bimodality of internal molecular dynamics. These insights, extracted from a combination of approaches, suggest that condensates formed by multivalent proteins share features with network fluids formed by associative systems such as patchy or hairy colloids.
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spelling pubmed-106021262023-10-27 Biomolecular condensates form spatially inhomogeneous network fluids Dar, Furqan Cohen, Samuel R. Mitrea, Diana M. Phillips, Aaron H. Nagy, Gergely Leite, Wellington C. Stanley, Christopher B. Choi, Jeong-Mo Kriwacki, Richard W. Pappu, Rohit V. Res Sq Article The functions of biomolecular condensates are thought to be influenced by their material properties, and these are in turn determined by the multiscale structural features within condensates. However, structural characterizations of condensates are challenging, and hence rarely reported. Here, we deploy a combination of small angle neutron scattering, fluorescence recovery after photobleaching, and bespoke coarse-grained molecular dynamics simulations to provide structural descriptions of model condensates that mimic nucleolar granular components (GCs). We show that facsimiles of GCs are network fluids featuring spatial inhomogeneities across hierarchies of length scales that reflect the contributions of distinct protein and peptide domains. The network-like inhomogeneous organization is characterized by a coexistence of liquid- and gas-like macromolecular densities that engenders bimodality of internal molecular dynamics. These insights, extracted from a combination of approaches, suggest that condensates formed by multivalent proteins share features with network fluids formed by associative systems such as patchy or hairy colloids. American Journal Experts 2023-10-18 /pmc/articles/PMC10602126/ /pubmed/37886520 http://dx.doi.org/10.21203/rs.3.rs-3419423/v1 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Dar, Furqan
Cohen, Samuel R.
Mitrea, Diana M.
Phillips, Aaron H.
Nagy, Gergely
Leite, Wellington C.
Stanley, Christopher B.
Choi, Jeong-Mo
Kriwacki, Richard W.
Pappu, Rohit V.
Biomolecular condensates form spatially inhomogeneous network fluids
title Biomolecular condensates form spatially inhomogeneous network fluids
title_full Biomolecular condensates form spatially inhomogeneous network fluids
title_fullStr Biomolecular condensates form spatially inhomogeneous network fluids
title_full_unstemmed Biomolecular condensates form spatially inhomogeneous network fluids
title_short Biomolecular condensates form spatially inhomogeneous network fluids
title_sort biomolecular condensates form spatially inhomogeneous network fluids
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602126/
https://www.ncbi.nlm.nih.gov/pubmed/37886520
http://dx.doi.org/10.21203/rs.3.rs-3419423/v1
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