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Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase

L‐Sorbosone dehydrogenase (SNDH) is a key enzyme involved in the biosynthesis of 2‐keto‐L‐gulonic acid , which is a direct precursor for the industrial scale production of vitamin C. Elucidating the structure and the catalytic mechanism is essential for improving SNDH performance. By solving the cry...

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Autores principales: Li, Dong, Deng, Zhiwei, Hou, Xiaodong, Qin, Zhijie, Wang, Xinglong, Yin, Dejing, Chen, Yue, Rao, Yijian, Chen, Jian, Zhou, Jingwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602560/
https://www.ncbi.nlm.nih.gov/pubmed/37679059
http://dx.doi.org/10.1002/advs.202301955
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author Li, Dong
Deng, Zhiwei
Hou, Xiaodong
Qin, Zhijie
Wang, Xinglong
Yin, Dejing
Chen, Yue
Rao, Yijian
Chen, Jian
Zhou, Jingwen
author_facet Li, Dong
Deng, Zhiwei
Hou, Xiaodong
Qin, Zhijie
Wang, Xinglong
Yin, Dejing
Chen, Yue
Rao, Yijian
Chen, Jian
Zhou, Jingwen
author_sort Li, Dong
collection PubMed
description L‐Sorbosone dehydrogenase (SNDH) is a key enzyme involved in the biosynthesis of 2‐keto‐L‐gulonic acid , which is a direct precursor for the industrial scale production of vitamin C. Elucidating the structure and the catalytic mechanism is essential for improving SNDH performance. By solving the crystal structures of SNDH from Gluconobacter oxydans WSH‐004, a reversible disulfide bond between Cys295 and the catalytic Cys296 residues is discovered. It allowed SNDH to switch between oxidation and reduction states, resulting in opening or closing the substrate pocket. Moreover, the Cys296 is found to affect the NADP(+) binding pose with SNDH. Combining the in vitro biochemical and site‐directed mutagenesis studies, the redox‐based dynamic regulation and the catalytic mechanisms of SNDH are proposed. Moreover, the mutants with enhanced activity are obtained by extending substrate channels. This study not only elucidates the physiological control mechanism of the dehydrogenase, but also provides a theoretical basis for engineering similar enzymes.
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spelling pubmed-106025602023-10-27 Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase Li, Dong Deng, Zhiwei Hou, Xiaodong Qin, Zhijie Wang, Xinglong Yin, Dejing Chen, Yue Rao, Yijian Chen, Jian Zhou, Jingwen Adv Sci (Weinh) Research Articles L‐Sorbosone dehydrogenase (SNDH) is a key enzyme involved in the biosynthesis of 2‐keto‐L‐gulonic acid , which is a direct precursor for the industrial scale production of vitamin C. Elucidating the structure and the catalytic mechanism is essential for improving SNDH performance. By solving the crystal structures of SNDH from Gluconobacter oxydans WSH‐004, a reversible disulfide bond between Cys295 and the catalytic Cys296 residues is discovered. It allowed SNDH to switch between oxidation and reduction states, resulting in opening or closing the substrate pocket. Moreover, the Cys296 is found to affect the NADP(+) binding pose with SNDH. Combining the in vitro biochemical and site‐directed mutagenesis studies, the redox‐based dynamic regulation and the catalytic mechanisms of SNDH are proposed. Moreover, the mutants with enhanced activity are obtained by extending substrate channels. This study not only elucidates the physiological control mechanism of the dehydrogenase, but also provides a theoretical basis for engineering similar enzymes. John Wiley and Sons Inc. 2023-09-07 /pmc/articles/PMC10602560/ /pubmed/37679059 http://dx.doi.org/10.1002/advs.202301955 Text en © 2023 The Authors. Advanced Science published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Li, Dong
Deng, Zhiwei
Hou, Xiaodong
Qin, Zhijie
Wang, Xinglong
Yin, Dejing
Chen, Yue
Rao, Yijian
Chen, Jian
Zhou, Jingwen
Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase
title Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase
title_full Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase
title_fullStr Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase
title_full_unstemmed Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase
title_short Structural Insight into the Catalytic Mechanisms of an L‐Sorbosone Dehydrogenase
title_sort structural insight into the catalytic mechanisms of an l‐sorbosone dehydrogenase
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602560/
https://www.ncbi.nlm.nih.gov/pubmed/37679059
http://dx.doi.org/10.1002/advs.202301955
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