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Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage

DNA, as the storage medium in organisms, can address the shortcomings of existing electromagnetic storage media, such as low information density, high maintenance power consumption, and short storage time. Current research on DNA storage mainly focuses on designing corresponding encoders to convert...

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Detalles Bibliográficos
Autores principales: Yang, Xu, Lai, Langwen, Qiang, Xiaoli, Deng, Ming, Xie, Yuhao, Shi, Xiaolong, Kou, Zheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602677/
https://www.ncbi.nlm.nih.gov/pubmed/37900965
http://dx.doi.org/10.3389/fbinf.2023.1276934
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author Yang, Xu
Lai, Langwen
Qiang, Xiaoli
Deng, Ming
Xie, Yuhao
Shi, Xiaolong
Kou, Zheng
author_facet Yang, Xu
Lai, Langwen
Qiang, Xiaoli
Deng, Ming
Xie, Yuhao
Shi, Xiaolong
Kou, Zheng
author_sort Yang, Xu
collection PubMed
description DNA, as the storage medium in organisms, can address the shortcomings of existing electromagnetic storage media, such as low information density, high maintenance power consumption, and short storage time. Current research on DNA storage mainly focuses on designing corresponding encoders to convert binary data into DNA base data that meets biological constraints. We have created a new Chinese character code table that enables exceptionally high information storage density for storing Chinese characters (compared to traditional UTF-8 encoding). To meet biological constraints, we have devised a DNA shift coding scheme with low algorithmic complexity, which can encode any strand of DNA even has excessively long homopolymer. The designed DNA sequence will be stored in a double-stranded plasmid of 744bp, ensuring high reliability during storage. Additionally, the plasmid‘s resistance to environmental interference ensuring long-term stable information storage. Moreover, it can be replicated at a lower cost.
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spelling pubmed-106026772023-10-27 Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage Yang, Xu Lai, Langwen Qiang, Xiaoli Deng, Ming Xie, Yuhao Shi, Xiaolong Kou, Zheng Front Bioinform Bioinformatics DNA, as the storage medium in organisms, can address the shortcomings of existing electromagnetic storage media, such as low information density, high maintenance power consumption, and short storage time. Current research on DNA storage mainly focuses on designing corresponding encoders to convert binary data into DNA base data that meets biological constraints. We have created a new Chinese character code table that enables exceptionally high information storage density for storing Chinese characters (compared to traditional UTF-8 encoding). To meet biological constraints, we have devised a DNA shift coding scheme with low algorithmic complexity, which can encode any strand of DNA even has excessively long homopolymer. The designed DNA sequence will be stored in a double-stranded plasmid of 744bp, ensuring high reliability during storage. Additionally, the plasmid‘s resistance to environmental interference ensuring long-term stable information storage. Moreover, it can be replicated at a lower cost. Frontiers Media S.A. 2023-10-12 /pmc/articles/PMC10602677/ /pubmed/37900965 http://dx.doi.org/10.3389/fbinf.2023.1276934 Text en Copyright © 2023 Yang, Lai, Qiang, Deng, Xie, Shi and Kou. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Yang, Xu
Lai, Langwen
Qiang, Xiaoli
Deng, Ming
Xie, Yuhao
Shi, Xiaolong
Kou, Zheng
Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
title Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
title_full Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
title_fullStr Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
title_full_unstemmed Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
title_short Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
title_sort towards chinese text and dna shift encoding scheme based on biomass plasmid storage
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602677/
https://www.ncbi.nlm.nih.gov/pubmed/37900965
http://dx.doi.org/10.3389/fbinf.2023.1276934
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