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Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
DNA, as the storage medium in organisms, can address the shortcomings of existing electromagnetic storage media, such as low information density, high maintenance power consumption, and short storage time. Current research on DNA storage mainly focuses on designing corresponding encoders to convert...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602677/ https://www.ncbi.nlm.nih.gov/pubmed/37900965 http://dx.doi.org/10.3389/fbinf.2023.1276934 |
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author | Yang, Xu Lai, Langwen Qiang, Xiaoli Deng, Ming Xie, Yuhao Shi, Xiaolong Kou, Zheng |
author_facet | Yang, Xu Lai, Langwen Qiang, Xiaoli Deng, Ming Xie, Yuhao Shi, Xiaolong Kou, Zheng |
author_sort | Yang, Xu |
collection | PubMed |
description | DNA, as the storage medium in organisms, can address the shortcomings of existing electromagnetic storage media, such as low information density, high maintenance power consumption, and short storage time. Current research on DNA storage mainly focuses on designing corresponding encoders to convert binary data into DNA base data that meets biological constraints. We have created a new Chinese character code table that enables exceptionally high information storage density for storing Chinese characters (compared to traditional UTF-8 encoding). To meet biological constraints, we have devised a DNA shift coding scheme with low algorithmic complexity, which can encode any strand of DNA even has excessively long homopolymer. The designed DNA sequence will be stored in a double-stranded plasmid of 744bp, ensuring high reliability during storage. Additionally, the plasmid‘s resistance to environmental interference ensuring long-term stable information storage. Moreover, it can be replicated at a lower cost. |
format | Online Article Text |
id | pubmed-10602677 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106026772023-10-27 Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage Yang, Xu Lai, Langwen Qiang, Xiaoli Deng, Ming Xie, Yuhao Shi, Xiaolong Kou, Zheng Front Bioinform Bioinformatics DNA, as the storage medium in organisms, can address the shortcomings of existing electromagnetic storage media, such as low information density, high maintenance power consumption, and short storage time. Current research on DNA storage mainly focuses on designing corresponding encoders to convert binary data into DNA base data that meets biological constraints. We have created a new Chinese character code table that enables exceptionally high information storage density for storing Chinese characters (compared to traditional UTF-8 encoding). To meet biological constraints, we have devised a DNA shift coding scheme with low algorithmic complexity, which can encode any strand of DNA even has excessively long homopolymer. The designed DNA sequence will be stored in a double-stranded plasmid of 744bp, ensuring high reliability during storage. Additionally, the plasmid‘s resistance to environmental interference ensuring long-term stable information storage. Moreover, it can be replicated at a lower cost. Frontiers Media S.A. 2023-10-12 /pmc/articles/PMC10602677/ /pubmed/37900965 http://dx.doi.org/10.3389/fbinf.2023.1276934 Text en Copyright © 2023 Yang, Lai, Qiang, Deng, Xie, Shi and Kou. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioinformatics Yang, Xu Lai, Langwen Qiang, Xiaoli Deng, Ming Xie, Yuhao Shi, Xiaolong Kou, Zheng Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage |
title | Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage |
title_full | Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage |
title_fullStr | Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage |
title_full_unstemmed | Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage |
title_short | Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage |
title_sort | towards chinese text and dna shift encoding scheme based on biomass plasmid storage |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10602677/ https://www.ncbi.nlm.nih.gov/pubmed/37900965 http://dx.doi.org/10.3389/fbinf.2023.1276934 |
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