Cargando…
Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon
The measurement of diversity is a central component of studies in ecology and evolution, with broad uses spanning multiple biological scales. Studies of diversity conducted in population genetics and ecology make use of analogous concepts and even employ equivalent mathematical formulas. For the Sha...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603011/ https://www.ncbi.nlm.nih.gov/pubmed/37884812 http://dx.doi.org/10.1007/s00285-023-01997-3 |
_version_ | 1785126509729546240 |
---|---|
author | Morrison, Maike L. Rosenberg, Noah A. |
author_facet | Morrison, Maike L. Rosenberg, Noah A. |
author_sort | Morrison, Maike L. |
collection | PubMed |
description | The measurement of diversity is a central component of studies in ecology and evolution, with broad uses spanning multiple biological scales. Studies of diversity conducted in population genetics and ecology make use of analogous concepts and even employ equivalent mathematical formulas. For the Shannon entropy statistic, recent developments in the mathematics of diversity in population genetics have produced mathematical constraints on the statistic in relation to the frequency of the most frequent allele. These results have characterized the ways in which standard measures depend on the highest-frequency class in a discrete probability distribution. Here, we extend mathematical constraints on the Shannon entropy in relation to entries in specific positions in a vector of species abundances, listed in decreasing order. We illustrate the new mathematical results using abundance data from examples involving coral reefs and sponge microbiomes. The new results update the understanding of the relationship of a standard measure to the abundance vectors from which it is calculated, potentially contributing to improved interpretation of numerical measurements of biodiversity. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-023-01997-3. |
format | Online Article Text |
id | pubmed-10603011 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-106030112023-10-28 Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon Morrison, Maike L. Rosenberg, Noah A. J Math Biol Article The measurement of diversity is a central component of studies in ecology and evolution, with broad uses spanning multiple biological scales. Studies of diversity conducted in population genetics and ecology make use of analogous concepts and even employ equivalent mathematical formulas. For the Shannon entropy statistic, recent developments in the mathematics of diversity in population genetics have produced mathematical constraints on the statistic in relation to the frequency of the most frequent allele. These results have characterized the ways in which standard measures depend on the highest-frequency class in a discrete probability distribution. Here, we extend mathematical constraints on the Shannon entropy in relation to entries in specific positions in a vector of species abundances, listed in decreasing order. We illustrate the new mathematical results using abundance data from examples involving coral reefs and sponge microbiomes. The new results update the understanding of the relationship of a standard measure to the abundance vectors from which it is calculated, potentially contributing to improved interpretation of numerical measurements of biodiversity. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-023-01997-3. Springer Berlin Heidelberg 2023-10-26 2023 /pmc/articles/PMC10603011/ /pubmed/37884812 http://dx.doi.org/10.1007/s00285-023-01997-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Morrison, Maike L. Rosenberg, Noah A. Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon |
title | Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon |
title_full | Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon |
title_fullStr | Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon |
title_full_unstemmed | Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon |
title_short | Mathematical bounds on Shannon entropy given the abundance of the ith most abundant taxon |
title_sort | mathematical bounds on shannon entropy given the abundance of the ith most abundant taxon |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603011/ https://www.ncbi.nlm.nih.gov/pubmed/37884812 http://dx.doi.org/10.1007/s00285-023-01997-3 |
work_keys_str_mv | AT morrisonmaikel mathematicalboundsonshannonentropygiventheabundanceoftheithmostabundanttaxon AT rosenbergnoaha mathematicalboundsonshannonentropygiventheabundanceoftheithmostabundanttaxon |