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Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging

[Image: see text] In the context of multivariate curve resolution (MCR) and spectral unmixing, essential information (EI) corresponds to the most linearly dissimilar rows and/or columns of a two-way data matrix. In recent works, the assessment of EI has been revealed to be a very useful practical to...

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Autores principales: Coic, Laureen, Vitale, Raffaele, Moreau, Myriam, Rousseau, David, de Morais Goulart, José Henrique, Dobigeon, Nicolas, Ruckebusch, Cyril
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603605/
https://www.ncbi.nlm.nih.gov/pubmed/37821082
http://dx.doi.org/10.1021/acs.analchem.3c01383
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author Coic, Laureen
Vitale, Raffaele
Moreau, Myriam
Rousseau, David
de Morais Goulart, José Henrique
Dobigeon, Nicolas
Ruckebusch, Cyril
author_facet Coic, Laureen
Vitale, Raffaele
Moreau, Myriam
Rousseau, David
de Morais Goulart, José Henrique
Dobigeon, Nicolas
Ruckebusch, Cyril
author_sort Coic, Laureen
collection PubMed
description [Image: see text] In the context of multivariate curve resolution (MCR) and spectral unmixing, essential information (EI) corresponds to the most linearly dissimilar rows and/or columns of a two-way data matrix. In recent works, the assessment of EI has been revealed to be a very useful practical tool to select the most relevant spectral information before MCR analysis, key features being speed and compression ability. However, the canonical approach relies on the principal component analysis to evaluate the convex hull that encapsulates the data structure in the normalized score space. This implies that the evaluation of the essentiality of each spectrum can only be achieved after all the spectra have been acquired by the instrument. This paper proposes a new approach to extract EI in the Fourier domain (EIFD). Spectral information is transformed into Fourier coefficients, and EI is assessed from a convex hull analysis of the data point cloud in the 2D phasor plots of a few selected harmonics. Because the coordinate system of a phasor plot does not depend on the data themselves, the evaluation of the essentiality of the information carried by each spectrum can be achieved individually and independently from the others. As a result, time-consuming operations like Raman spectral imaging can be significantly accelerated exploiting a chemometric-driven (i.e., based on the EI content of a spectral pixel) procedure for data acquisition and targeted sampling. The usefulness of EIFD is shown by analyzing Raman hyperspectral microimaging data, demonstrating a potential 50-fold acceleration of Raman acquisition.
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spelling pubmed-106036052023-10-28 Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging Coic, Laureen Vitale, Raffaele Moreau, Myriam Rousseau, David de Morais Goulart, José Henrique Dobigeon, Nicolas Ruckebusch, Cyril Anal Chem [Image: see text] In the context of multivariate curve resolution (MCR) and spectral unmixing, essential information (EI) corresponds to the most linearly dissimilar rows and/or columns of a two-way data matrix. In recent works, the assessment of EI has been revealed to be a very useful practical tool to select the most relevant spectral information before MCR analysis, key features being speed and compression ability. However, the canonical approach relies on the principal component analysis to evaluate the convex hull that encapsulates the data structure in the normalized score space. This implies that the evaluation of the essentiality of each spectrum can only be achieved after all the spectra have been acquired by the instrument. This paper proposes a new approach to extract EI in the Fourier domain (EIFD). Spectral information is transformed into Fourier coefficients, and EI is assessed from a convex hull analysis of the data point cloud in the 2D phasor plots of a few selected harmonics. Because the coordinate system of a phasor plot does not depend on the data themselves, the evaluation of the essentiality of the information carried by each spectrum can be achieved individually and independently from the others. As a result, time-consuming operations like Raman spectral imaging can be significantly accelerated exploiting a chemometric-driven (i.e., based on the EI content of a spectral pixel) procedure for data acquisition and targeted sampling. The usefulness of EIFD is shown by analyzing Raman hyperspectral microimaging data, demonstrating a potential 50-fold acceleration of Raman acquisition. American Chemical Society 2023-10-11 /pmc/articles/PMC10603605/ /pubmed/37821082 http://dx.doi.org/10.1021/acs.analchem.3c01383 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Coic, Laureen
Vitale, Raffaele
Moreau, Myriam
Rousseau, David
de Morais Goulart, José Henrique
Dobigeon, Nicolas
Ruckebusch, Cyril
Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging
title Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging
title_full Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging
title_fullStr Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging
title_full_unstemmed Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging
title_short Assessment of Essential Information in the Fourier Domain to Accelerate Raman Hyperspectral Microimaging
title_sort assessment of essential information in the fourier domain to accelerate raman hyperspectral microimaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603605/
https://www.ncbi.nlm.nih.gov/pubmed/37821082
http://dx.doi.org/10.1021/acs.analchem.3c01383
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