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SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma

Nasopharyngeal carcinoma (NPC) is a kind of malignant tumor. The accurate and automatic segmentation of computed tomography (CT) images of organs at risk (OAR) is clinically significant. In recent years, deep learning models represented by U-Net have been widely applied in medical image segmentation...

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Autores principales: Huang, Zexi, Yang, Xin, Huang, Sijuan, Guo, Lihua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603910/
https://www.ncbi.nlm.nih.gov/pubmed/37892849
http://dx.doi.org/10.3390/bioengineering10101119
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author Huang, Zexi
Yang, Xin
Huang, Sijuan
Guo, Lihua
author_facet Huang, Zexi
Yang, Xin
Huang, Sijuan
Guo, Lihua
author_sort Huang, Zexi
collection PubMed
description Nasopharyngeal carcinoma (NPC) is a kind of malignant tumor. The accurate and automatic segmentation of computed tomography (CT) images of organs at risk (OAR) is clinically significant. In recent years, deep learning models represented by U-Net have been widely applied in medical image segmentation tasks, which can help to reduce doctors’ workload. In the OAR segmentation of NPC, the sizes of the OAR are variable, and some of their volumes are small. Traditional deep neural networks underperform in segmentation due to the insufficient use of global and multi-size information. Therefore, a new SE-Connection Pyramid Network (SECP-Net) is proposed. For extracting global and multi-size information, the SECP-Net designs an SE-connection module and a pyramid structure for improving the segmentation performance, especially that of small organs. SECP-Net also uses an auto-context cascaded structure to further refine the segmentation results. Comparative experiments are conducted between SECP-Net and other recent methods on a private dataset with CT images of the head and neck and a public liver dataset. Five-fold cross-validation is used to evaluate the performance based on two metrics; i.e., Dice and Jaccard similarity. The experimental results show that SECP-Net can achieve SOTA performance in these two challenging tasks.
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spelling pubmed-106039102023-10-28 SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma Huang, Zexi Yang, Xin Huang, Sijuan Guo, Lihua Bioengineering (Basel) Article Nasopharyngeal carcinoma (NPC) is a kind of malignant tumor. The accurate and automatic segmentation of computed tomography (CT) images of organs at risk (OAR) is clinically significant. In recent years, deep learning models represented by U-Net have been widely applied in medical image segmentation tasks, which can help to reduce doctors’ workload. In the OAR segmentation of NPC, the sizes of the OAR are variable, and some of their volumes are small. Traditional deep neural networks underperform in segmentation due to the insufficient use of global and multi-size information. Therefore, a new SE-Connection Pyramid Network (SECP-Net) is proposed. For extracting global and multi-size information, the SECP-Net designs an SE-connection module and a pyramid structure for improving the segmentation performance, especially that of small organs. SECP-Net also uses an auto-context cascaded structure to further refine the segmentation results. Comparative experiments are conducted between SECP-Net and other recent methods on a private dataset with CT images of the head and neck and a public liver dataset. Five-fold cross-validation is used to evaluate the performance based on two metrics; i.e., Dice and Jaccard similarity. The experimental results show that SECP-Net can achieve SOTA performance in these two challenging tasks. MDPI 2023-09-24 /pmc/articles/PMC10603910/ /pubmed/37892849 http://dx.doi.org/10.3390/bioengineering10101119 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Huang, Zexi
Yang, Xin
Huang, Sijuan
Guo, Lihua
SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma
title SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma
title_full SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma
title_fullStr SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma
title_full_unstemmed SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma
title_short SECP-Net: SE-Connection Pyramid Network for Segmentation of Organs at Risk with Nasopharyngeal Carcinoma
title_sort secp-net: se-connection pyramid network for segmentation of organs at risk with nasopharyngeal carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603910/
https://www.ncbi.nlm.nih.gov/pubmed/37892849
http://dx.doi.org/10.3390/bioengineering10101119
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