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WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval

The paper proposes a federated content-based medical image retrieval (FedCBMIR) tool that utilizes federated learning (FL) to address the challenges of acquiring a diverse medical data set for training CBMIR models. CBMIR is a tool to find the most similar cases in the data set to assist pathologist...

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Detalles Bibliográficos
Autores principales: Tabatabaei, Zahra, Wang, Yuandou, Colomer, Adrián, Oliver Moll, Javier, Zhao, Zhiming, Naranjo, Valery
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10604333/
https://www.ncbi.nlm.nih.gov/pubmed/37892874
http://dx.doi.org/10.3390/bioengineering10101144
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author Tabatabaei, Zahra
Wang, Yuandou
Colomer, Adrián
Oliver Moll, Javier
Zhao, Zhiming
Naranjo, Valery
author_facet Tabatabaei, Zahra
Wang, Yuandou
Colomer, Adrián
Oliver Moll, Javier
Zhao, Zhiming
Naranjo, Valery
author_sort Tabatabaei, Zahra
collection PubMed
description The paper proposes a federated content-based medical image retrieval (FedCBMIR) tool that utilizes federated learning (FL) to address the challenges of acquiring a diverse medical data set for training CBMIR models. CBMIR is a tool to find the most similar cases in the data set to assist pathologists. Training such a tool necessitates a pool of whole-slide images (WSIs) to train the feature extractor (FE) to extract an optimal embedding vector. The strict regulations surrounding data sharing in hospitals makes it difficult to collect a rich data set. FedCBMIR distributes an unsupervised FE to collaborative centers for training without sharing the data set, resulting in shorter training times and higher performance. FedCBMIR was evaluated by mimicking two experiments, including two clients with two different breast cancer data sets, namely BreaKHis and Camelyon17 (CAM17), and four clients with the BreaKHis data set at four different magnifications. FedCBMIR increases the F1 score (F1S) of each client from 96% to 98.1% in CAM17 and from 95% to 98.4% in BreaKHis, with 11.44 fewer hours in training time. FedCBMIR provides 98%, 96%, 94%, and 97% F1S in the BreaKHis experiment with a generalized model and accomplishes this in 25.53 fewer hours of training.
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spelling pubmed-106043332023-10-28 WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval Tabatabaei, Zahra Wang, Yuandou Colomer, Adrián Oliver Moll, Javier Zhao, Zhiming Naranjo, Valery Bioengineering (Basel) Article The paper proposes a federated content-based medical image retrieval (FedCBMIR) tool that utilizes federated learning (FL) to address the challenges of acquiring a diverse medical data set for training CBMIR models. CBMIR is a tool to find the most similar cases in the data set to assist pathologists. Training such a tool necessitates a pool of whole-slide images (WSIs) to train the feature extractor (FE) to extract an optimal embedding vector. The strict regulations surrounding data sharing in hospitals makes it difficult to collect a rich data set. FedCBMIR distributes an unsupervised FE to collaborative centers for training without sharing the data set, resulting in shorter training times and higher performance. FedCBMIR was evaluated by mimicking two experiments, including two clients with two different breast cancer data sets, namely BreaKHis and Camelyon17 (CAM17), and four clients with the BreaKHis data set at four different magnifications. FedCBMIR increases the F1 score (F1S) of each client from 96% to 98.1% in CAM17 and from 95% to 98.4% in BreaKHis, with 11.44 fewer hours in training time. FedCBMIR provides 98%, 96%, 94%, and 97% F1S in the BreaKHis experiment with a generalized model and accomplishes this in 25.53 fewer hours of training. MDPI 2023-09-28 /pmc/articles/PMC10604333/ /pubmed/37892874 http://dx.doi.org/10.3390/bioengineering10101144 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tabatabaei, Zahra
Wang, Yuandou
Colomer, Adrián
Oliver Moll, Javier
Zhao, Zhiming
Naranjo, Valery
WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval
title WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval
title_full WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval
title_fullStr WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval
title_full_unstemmed WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval
title_short WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval
title_sort wwfedcbmir: world-wide federated content-based medical image retrieval
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10604333/
https://www.ncbi.nlm.nih.gov/pubmed/37892874
http://dx.doi.org/10.3390/bioengineering10101144
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