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Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications

Nucleic acid extraction represents the “first step” in molecular diagnostic experiments. The quality of this extraction serves as a fundamental prerequisite for ensuring the accuracy of nucleic acid detection. This article presents a comprehensive design scheme for a rapid automated nucleic acid ext...

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Autores principales: Li, Yao, Liu, Sha, Wang, Yuanyuan, Wang, Yue, Li, Song, He, Nongyue, Deng, Yan, Chen, Zhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10605191/
https://www.ncbi.nlm.nih.gov/pubmed/37887096
http://dx.doi.org/10.3390/bios13100903
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author Li, Yao
Liu, Sha
Wang, Yuanyuan
Wang, Yue
Li, Song
He, Nongyue
Deng, Yan
Chen, Zhu
author_facet Li, Yao
Liu, Sha
Wang, Yuanyuan
Wang, Yue
Li, Song
He, Nongyue
Deng, Yan
Chen, Zhu
author_sort Li, Yao
collection PubMed
description Nucleic acid extraction represents the “first step” in molecular diagnostic experiments. The quality of this extraction serves as a fundamental prerequisite for ensuring the accuracy of nucleic acid detection. This article presents a comprehensive design scheme for a rapid automated nucleic acid extraction system based on magnetic separation. The design and implementation of the system are analyzed and investigated in-depth, focusing on the core methods, hardware control, and software control of the automated nucleic acid extraction system. Additionally, a study and evaluation were carried out concerning the nucleic acid extraction and detection aspects encompassed by the system. The results demonstrate that the temperature deviation in the lysis and elution fluids is approximately ±1 °C, the positioning accuracy of the system’s movement is ±0.005 mm, the average magnetic bead recovery rate is 94.98%, and the average nucleic acid recovery rate is 91.83%. The developed automated system and manual methods are employed for sample extraction, enabling the isolation of highly pure nucleic acids from bacteria, blood, and animal tissues for RT-PCR detection. The instrument employs lysis temperatures ranging from 70–80 °C, elution temperature of 80 °C, and drying time of 5–10 min, with a total extraction time of less than 35 min for different sample types. Overall, the system yields high nucleic acid concentration and purity, exhibits stable instrument operation, good repeatability, high efficiency, and low cost. It meets the requirements of genetic-level research and is worthy of clinical promotion and usage.
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spelling pubmed-106051912023-10-28 Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications Li, Yao Liu, Sha Wang, Yuanyuan Wang, Yue Li, Song He, Nongyue Deng, Yan Chen, Zhu Biosensors (Basel) Article Nucleic acid extraction represents the “first step” in molecular diagnostic experiments. The quality of this extraction serves as a fundamental prerequisite for ensuring the accuracy of nucleic acid detection. This article presents a comprehensive design scheme for a rapid automated nucleic acid extraction system based on magnetic separation. The design and implementation of the system are analyzed and investigated in-depth, focusing on the core methods, hardware control, and software control of the automated nucleic acid extraction system. Additionally, a study and evaluation were carried out concerning the nucleic acid extraction and detection aspects encompassed by the system. The results demonstrate that the temperature deviation in the lysis and elution fluids is approximately ±1 °C, the positioning accuracy of the system’s movement is ±0.005 mm, the average magnetic bead recovery rate is 94.98%, and the average nucleic acid recovery rate is 91.83%. The developed automated system and manual methods are employed for sample extraction, enabling the isolation of highly pure nucleic acids from bacteria, blood, and animal tissues for RT-PCR detection. The instrument employs lysis temperatures ranging from 70–80 °C, elution temperature of 80 °C, and drying time of 5–10 min, with a total extraction time of less than 35 min for different sample types. Overall, the system yields high nucleic acid concentration and purity, exhibits stable instrument operation, good repeatability, high efficiency, and low cost. It meets the requirements of genetic-level research and is worthy of clinical promotion and usage. MDPI 2023-09-23 /pmc/articles/PMC10605191/ /pubmed/37887096 http://dx.doi.org/10.3390/bios13100903 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Li, Yao
Liu, Sha
Wang, Yuanyuan
Wang, Yue
Li, Song
He, Nongyue
Deng, Yan
Chen, Zhu
Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications
title Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications
title_full Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications
title_fullStr Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications
title_full_unstemmed Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications
title_short Research on a Magnetic Separation-Based Rapid Nucleic Acid Extraction System and Its Detection Applications
title_sort research on a magnetic separation-based rapid nucleic acid extraction system and its detection applications
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10605191/
https://www.ncbi.nlm.nih.gov/pubmed/37887096
http://dx.doi.org/10.3390/bios13100903
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