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Entropy of Charge Inversion in DNA including One-Loop Fluctuations
The entropy and charge distributions have been calculated for a simple model of polyelectrolytes attached to the surface of DNA using a field-theoretic method that includes fluctuations to the lowest one-loop order beyond mean-field theory. Experiments have revealed correlation-driven behavior of DN...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10606583/ https://www.ncbi.nlm.nih.gov/pubmed/37895495 http://dx.doi.org/10.3390/e25101373 |
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author | Sievert, Matthew D. Bishop, Marilyn F. McMullen, Tom |
author_facet | Sievert, Matthew D. Bishop, Marilyn F. McMullen, Tom |
author_sort | Sievert, Matthew D. |
collection | PubMed |
description | The entropy and charge distributions have been calculated for a simple model of polyelectrolytes attached to the surface of DNA using a field-theoretic method that includes fluctuations to the lowest one-loop order beyond mean-field theory. Experiments have revealed correlation-driven behavior of DNA in charged solutions, including charge inversion and condensation. In our model, the condensed polyelectrolytes are taken to be doubly charged dimers of length comparable to the distance between sites along the phosphate chains. Within this lattice gas model, each adsorption site is assumed to have either a vacancy or a positively charged dimer attached with the dimer oriented either parallel or perpendicular to the double-helix DNA chain. We find that the inclusion of the fluctuation terms decreases the entropy by ∼50% in the weak-binding regime. There, the bound dimer concentration is low because the dimers are repelled from the DNA molecule, which competes with the chemical potential driving them from the solution to the DNA surface. Surprisingly, this decrease in entropy due to correlations is so significant that it overcompensates for the entropy increase at the mean-field level, so that the total entropy is even lower than in the absence of interactions between lattice sites. As a bonus, we present a transparent exposition of the methods used that could be useful to students and others wishing to use this formulation to extend this calculation to more realistic models. |
format | Online Article Text |
id | pubmed-10606583 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106065832023-10-28 Entropy of Charge Inversion in DNA including One-Loop Fluctuations Sievert, Matthew D. Bishop, Marilyn F. McMullen, Tom Entropy (Basel) Article The entropy and charge distributions have been calculated for a simple model of polyelectrolytes attached to the surface of DNA using a field-theoretic method that includes fluctuations to the lowest one-loop order beyond mean-field theory. Experiments have revealed correlation-driven behavior of DNA in charged solutions, including charge inversion and condensation. In our model, the condensed polyelectrolytes are taken to be doubly charged dimers of length comparable to the distance between sites along the phosphate chains. Within this lattice gas model, each adsorption site is assumed to have either a vacancy or a positively charged dimer attached with the dimer oriented either parallel or perpendicular to the double-helix DNA chain. We find that the inclusion of the fluctuation terms decreases the entropy by ∼50% in the weak-binding regime. There, the bound dimer concentration is low because the dimers are repelled from the DNA molecule, which competes with the chemical potential driving them from the solution to the DNA surface. Surprisingly, this decrease in entropy due to correlations is so significant that it overcompensates for the entropy increase at the mean-field level, so that the total entropy is even lower than in the absence of interactions between lattice sites. As a bonus, we present a transparent exposition of the methods used that could be useful to students and others wishing to use this formulation to extend this calculation to more realistic models. MDPI 2023-09-24 /pmc/articles/PMC10606583/ /pubmed/37895495 http://dx.doi.org/10.3390/e25101373 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sievert, Matthew D. Bishop, Marilyn F. McMullen, Tom Entropy of Charge Inversion in DNA including One-Loop Fluctuations |
title | Entropy of Charge Inversion in DNA including One-Loop Fluctuations |
title_full | Entropy of Charge Inversion in DNA including One-Loop Fluctuations |
title_fullStr | Entropy of Charge Inversion in DNA including One-Loop Fluctuations |
title_full_unstemmed | Entropy of Charge Inversion in DNA including One-Loop Fluctuations |
title_short | Entropy of Charge Inversion in DNA including One-Loop Fluctuations |
title_sort | entropy of charge inversion in dna including one-loop fluctuations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10606583/ https://www.ncbi.nlm.nih.gov/pubmed/37895495 http://dx.doi.org/10.3390/e25101373 |
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