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Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data

The Animal Metabolite Database (AMDB, https://amdb.online) is a freely accessible database with built-in statistical analysis tools, allowing one to browse and compare quantitative metabolomics data and raw NMR and MS data, as well as sample metadata, with a focus on the metabolite concentrations ra...

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Autores principales: Yanshole, Vadim V., Melnikov, Arsenty D., Yanshole, Lyudmila V., Zelentsova, Ekaterina A., Snytnikova, Olga A., Osik, Nataliya A., Fomenko, Maxim V., Savina, Ekaterina D., Kalinina, Anastasia V., Sharshov, Kirill A., Dubovitskiy, Nikita A., Kobtsev, Mikhail S., Zaikovskii, Anatolii A., Mariasina, Sofia S., Tsentalovich, Yuri P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10609207/
https://www.ncbi.nlm.nih.gov/pubmed/37887413
http://dx.doi.org/10.3390/metabo13101088
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author Yanshole, Vadim V.
Melnikov, Arsenty D.
Yanshole, Lyudmila V.
Zelentsova, Ekaterina A.
Snytnikova, Olga A.
Osik, Nataliya A.
Fomenko, Maxim V.
Savina, Ekaterina D.
Kalinina, Anastasia V.
Sharshov, Kirill A.
Dubovitskiy, Nikita A.
Kobtsev, Mikhail S.
Zaikovskii, Anatolii A.
Mariasina, Sofia S.
Tsentalovich, Yuri P.
author_facet Yanshole, Vadim V.
Melnikov, Arsenty D.
Yanshole, Lyudmila V.
Zelentsova, Ekaterina A.
Snytnikova, Olga A.
Osik, Nataliya A.
Fomenko, Maxim V.
Savina, Ekaterina D.
Kalinina, Anastasia V.
Sharshov, Kirill A.
Dubovitskiy, Nikita A.
Kobtsev, Mikhail S.
Zaikovskii, Anatolii A.
Mariasina, Sofia S.
Tsentalovich, Yuri P.
author_sort Yanshole, Vadim V.
collection PubMed
description The Animal Metabolite Database (AMDB, https://amdb.online) is a freely accessible database with built-in statistical analysis tools, allowing one to browse and compare quantitative metabolomics data and raw NMR and MS data, as well as sample metadata, with a focus on the metabolite concentrations rather than on the raw data itself. AMDB also functions as a platform for the metabolomics community, providing convenient deposition and exchange of quantitative metabolomic data. To date, the majority of the data in AMDB relate to the metabolite content of the eye lens and blood of vertebrates, primarily wild species from Siberia, Russia and laboratory rodents. However, data on other tissues (muscle, heart, liver, brain, and more) are also present, and the list of species and tissues is constantly growing. Typically, every sample in AMDB contains concentrations of 60–90 of the most abundant metabolites, provided in nanomoles per gram of wet tissue weight (nmol/g). We believe that AMDB will become a widely used tool in the community, as typical metabolite baseline concentrations in tissues of animal models will aid in a wide variety of fundamental and applied scientific fields, including, but not limited to, animal modeling of human diseases, assessment of medical formulations, and evolutionary and environmental studies.
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spelling pubmed-106092072023-10-28 Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data Yanshole, Vadim V. Melnikov, Arsenty D. Yanshole, Lyudmila V. Zelentsova, Ekaterina A. Snytnikova, Olga A. Osik, Nataliya A. Fomenko, Maxim V. Savina, Ekaterina D. Kalinina, Anastasia V. Sharshov, Kirill A. Dubovitskiy, Nikita A. Kobtsev, Mikhail S. Zaikovskii, Anatolii A. Mariasina, Sofia S. Tsentalovich, Yuri P. Metabolites Article The Animal Metabolite Database (AMDB, https://amdb.online) is a freely accessible database with built-in statistical analysis tools, allowing one to browse and compare quantitative metabolomics data and raw NMR and MS data, as well as sample metadata, with a focus on the metabolite concentrations rather than on the raw data itself. AMDB also functions as a platform for the metabolomics community, providing convenient deposition and exchange of quantitative metabolomic data. To date, the majority of the data in AMDB relate to the metabolite content of the eye lens and blood of vertebrates, primarily wild species from Siberia, Russia and laboratory rodents. However, data on other tissues (muscle, heart, liver, brain, and more) are also present, and the list of species and tissues is constantly growing. Typically, every sample in AMDB contains concentrations of 60–90 of the most abundant metabolites, provided in nanomoles per gram of wet tissue weight (nmol/g). We believe that AMDB will become a widely used tool in the community, as typical metabolite baseline concentrations in tissues of animal models will aid in a wide variety of fundamental and applied scientific fields, including, but not limited to, animal modeling of human diseases, assessment of medical formulations, and evolutionary and environmental studies. MDPI 2023-10-17 /pmc/articles/PMC10609207/ /pubmed/37887413 http://dx.doi.org/10.3390/metabo13101088 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yanshole, Vadim V.
Melnikov, Arsenty D.
Yanshole, Lyudmila V.
Zelentsova, Ekaterina A.
Snytnikova, Olga A.
Osik, Nataliya A.
Fomenko, Maxim V.
Savina, Ekaterina D.
Kalinina, Anastasia V.
Sharshov, Kirill A.
Dubovitskiy, Nikita A.
Kobtsev, Mikhail S.
Zaikovskii, Anatolii A.
Mariasina, Sofia S.
Tsentalovich, Yuri P.
Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
title Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
title_full Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
title_fullStr Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
title_full_unstemmed Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
title_short Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
title_sort animal metabolite database: metabolite concentrations in animal tissues and convenient comparison of quantitative metabolomic data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10609207/
https://www.ncbi.nlm.nih.gov/pubmed/37887413
http://dx.doi.org/10.3390/metabo13101088
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