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Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency

Phosphorus (P) is an important nutritional element needed by plants. Roots obtain P as inorganic phosphate (Pi), mostly in H(2)PO(−)(4) form. It is vital for plants to have a sufficient supply of Pi since it participates in important processes like photosynthesis, energy transfer, and protein activa...

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Autores principales: Salazar-Gutiérrez, Daizha, Cruz-Mendívil, Abraham, Villicaña, Claudia, Heredia, José Basilio, Lightbourn-Rojas, Luis Alberto, León-Félix, Josefina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10609356/
https://www.ncbi.nlm.nih.gov/pubmed/37887403
http://dx.doi.org/10.3390/metabo13101078
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author Salazar-Gutiérrez, Daizha
Cruz-Mendívil, Abraham
Villicaña, Claudia
Heredia, José Basilio
Lightbourn-Rojas, Luis Alberto
León-Félix, Josefina
author_facet Salazar-Gutiérrez, Daizha
Cruz-Mendívil, Abraham
Villicaña, Claudia
Heredia, José Basilio
Lightbourn-Rojas, Luis Alberto
León-Félix, Josefina
author_sort Salazar-Gutiérrez, Daizha
collection PubMed
description Phosphorus (P) is an important nutritional element needed by plants. Roots obtain P as inorganic phosphate (Pi), mostly in H(2)PO(−)(4) form. It is vital for plants to have a sufficient supply of Pi since it participates in important processes like photosynthesis, energy transfer, and protein activation, among others. The physicochemical properties and the organic material usually make Pi bioavailability in soil low, causing crops and undomesticated plants to experience variations in accessibility or even a persistent phosphate limitation. In this study, transcriptome data from pepper roots under low-Pi stress was analyzed in order to identify Pi starvation-responsive genes and their relationship with metabolic pathways and functions. Transcriptome data were obtained from pepper roots with Pi deficiency by RNASeq and analyzed with bioinformatic tools. A total of 97 differentially expressed genes (DEGs) were identified; Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment revealed that metabolic pathways, such as porphyrin and chlorophyll metabolism, were down-regulated, and galactose and fatty acid metabolism were up-regulated. The results indicate that bell pepper follows diverse processes related to low Pi tolerance regulation, such as the remobilization of internal Pi, alternative metabolic pathways to generate energy, and regulators of root development.
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spelling pubmed-106093562023-10-28 Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency Salazar-Gutiérrez, Daizha Cruz-Mendívil, Abraham Villicaña, Claudia Heredia, José Basilio Lightbourn-Rojas, Luis Alberto León-Félix, Josefina Metabolites Article Phosphorus (P) is an important nutritional element needed by plants. Roots obtain P as inorganic phosphate (Pi), mostly in H(2)PO(−)(4) form. It is vital for plants to have a sufficient supply of Pi since it participates in important processes like photosynthesis, energy transfer, and protein activation, among others. The physicochemical properties and the organic material usually make Pi bioavailability in soil low, causing crops and undomesticated plants to experience variations in accessibility or even a persistent phosphate limitation. In this study, transcriptome data from pepper roots under low-Pi stress was analyzed in order to identify Pi starvation-responsive genes and their relationship with metabolic pathways and functions. Transcriptome data were obtained from pepper roots with Pi deficiency by RNASeq and analyzed with bioinformatic tools. A total of 97 differentially expressed genes (DEGs) were identified; Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment revealed that metabolic pathways, such as porphyrin and chlorophyll metabolism, were down-regulated, and galactose and fatty acid metabolism were up-regulated. The results indicate that bell pepper follows diverse processes related to low Pi tolerance regulation, such as the remobilization of internal Pi, alternative metabolic pathways to generate energy, and regulators of root development. MDPI 2023-10-13 /pmc/articles/PMC10609356/ /pubmed/37887403 http://dx.doi.org/10.3390/metabo13101078 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Salazar-Gutiérrez, Daizha
Cruz-Mendívil, Abraham
Villicaña, Claudia
Heredia, José Basilio
Lightbourn-Rojas, Luis Alberto
León-Félix, Josefina
Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency
title Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency
title_full Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency
title_fullStr Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency
title_full_unstemmed Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency
title_short Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper (Capsicum annuum) to Phosphorus Deficiency
title_sort transcriptomic analysis reveals the response mechanisms of bell pepper (capsicum annuum) to phosphorus deficiency
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10609356/
https://www.ncbi.nlm.nih.gov/pubmed/37887403
http://dx.doi.org/10.3390/metabo13101078
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