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Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing

We study the performance of a cloud-based GPU-accelerated inference server to speed up event reconstruction in neutrino data batch jobs. Using detector data from the ProtoDUNE experiment and employing the standard DUNE grid job submission tools, we attempt to reprocess the data by running several th...

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Autores principales: Cai, Tejin, Herner, Kenneth, Yang, Tingjun, Wang, Michael, Acosta Flechas, Maria, Harris, Philip, Holzman, Burt, Pedro, Kevin, Tran, Nhan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10611601/
https://www.ncbi.nlm.nih.gov/pubmed/37899771
http://dx.doi.org/10.1007/s41781-023-00101-0
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author Cai, Tejin
Herner, Kenneth
Yang, Tingjun
Wang, Michael
Acosta Flechas, Maria
Harris, Philip
Holzman, Burt
Pedro, Kevin
Tran, Nhan
author_facet Cai, Tejin
Herner, Kenneth
Yang, Tingjun
Wang, Michael
Acosta Flechas, Maria
Harris, Philip
Holzman, Burt
Pedro, Kevin
Tran, Nhan
author_sort Cai, Tejin
collection PubMed
description We study the performance of a cloud-based GPU-accelerated inference server to speed up event reconstruction in neutrino data batch jobs. Using detector data from the ProtoDUNE experiment and employing the standard DUNE grid job submission tools, we attempt to reprocess the data by running several thousand concurrent grid jobs, a rate we expect to be typical of current and future neutrino physics experiments. We process most of the dataset with the GPU version of our processing algorithm and the remainder with the CPU version for timing comparisons. We find that a 100-GPU cloud-based server is able to easily meet the processing demand, and that using the GPU version of the event processing algorithm is two times faster than processing these data with the CPU version when comparing to the newest CPUs in our sample. The amount of data transferred to the inference server during the GPU runs can overwhelm even the highest-bandwidth network switches, however, unless care is taken to observe network facility limits or otherwise distribute the jobs to multiple sites. We discuss the lessons learned from this processing campaign and several avenues for future improvements.
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spelling pubmed-106116012023-10-29 Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing Cai, Tejin Herner, Kenneth Yang, Tingjun Wang, Michael Acosta Flechas, Maria Harris, Philip Holzman, Burt Pedro, Kevin Tran, Nhan Comput Softw Big Sci Research We study the performance of a cloud-based GPU-accelerated inference server to speed up event reconstruction in neutrino data batch jobs. Using detector data from the ProtoDUNE experiment and employing the standard DUNE grid job submission tools, we attempt to reprocess the data by running several thousand concurrent grid jobs, a rate we expect to be typical of current and future neutrino physics experiments. We process most of the dataset with the GPU version of our processing algorithm and the remainder with the CPU version for timing comparisons. We find that a 100-GPU cloud-based server is able to easily meet the processing demand, and that using the GPU version of the event processing algorithm is two times faster than processing these data with the CPU version when comparing to the newest CPUs in our sample. The amount of data transferred to the inference server during the GPU runs can overwhelm even the highest-bandwidth network switches, however, unless care is taken to observe network facility limits or otherwise distribute the jobs to multiple sites. We discuss the lessons learned from this processing campaign and several avenues for future improvements. Springer International Publishing 2023-10-27 2023 /pmc/articles/PMC10611601/ /pubmed/37899771 http://dx.doi.org/10.1007/s41781-023-00101-0 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Cai, Tejin
Herner, Kenneth
Yang, Tingjun
Wang, Michael
Acosta Flechas, Maria
Harris, Philip
Holzman, Burt
Pedro, Kevin
Tran, Nhan
Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing
title Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing
title_full Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing
title_fullStr Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing
title_full_unstemmed Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing
title_short Accelerating Machine Learning Inference with GPUs in ProtoDUNE Data Processing
title_sort accelerating machine learning inference with gpus in protodune data processing
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10611601/
https://www.ncbi.nlm.nih.gov/pubmed/37899771
http://dx.doi.org/10.1007/s41781-023-00101-0
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