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A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma

Clear cell renal cell carcinoma (ccRCC) is regulated by methylation modifications and long noncoding RNAs (lncRNAs). However, knowledge of N(7)-methylguanosine (m(7)G)-related lncRNAs that predict ccRCC prognosis remains insufficient. A prognostic multi-lncRNA signature was created using LASSO regre...

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Autores principales: Luo, Wang, Lu, Jing, Zheng, Xiang, Wang, JinJing, Qian, ShengYan, Bai, ZhiXun, Wu, MingSong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10611723/
https://www.ncbi.nlm.nih.gov/pubmed/37891201
http://dx.doi.org/10.1038/s41598-023-45287-w
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author Luo, Wang
Lu, Jing
Zheng, Xiang
Wang, JinJing
Qian, ShengYan
Bai, ZhiXun
Wu, MingSong
author_facet Luo, Wang
Lu, Jing
Zheng, Xiang
Wang, JinJing
Qian, ShengYan
Bai, ZhiXun
Wu, MingSong
author_sort Luo, Wang
collection PubMed
description Clear cell renal cell carcinoma (ccRCC) is regulated by methylation modifications and long noncoding RNAs (lncRNAs). However, knowledge of N(7)-methylguanosine (m(7)G)-related lncRNAs that predict ccRCC prognosis remains insufficient. A prognostic multi-lncRNA signature was created using LASSO regression to examine the differential expression of m7G-related lncRNAs in ccRCC. Furthermore, we performed Kaplan–Meier analysis and area under the curve (AUC) analysis for diagnosis. In all, a model based on five lncRNAs was developed. Principal component analysis (PCA) indicated that the risk model precisely separated the patients into different groups. The IC(50) value for drug sensitivity divided patients into two risk groups. High-risk group of patients was more susceptible to A.443654, A.770041, ABT.888, AMG.706, and AZ628. Moreover, a lower tumor mutation burden combined with low-risk scores was associated with a better prognosis of ccRCC. Quantitative real-time polymerase chain reaction (qRT-PCR) exhibited that the expression levels of LINC01507, AC093278.2 were very high in all five ccRCC cell lines, AC084876.1 was upregulated in all ccRCC cell lines except 786-O, and the levels of AL118508.1 and DUXAP8 were upregulated in the Caki-1 cell line. This risk model may be promising for the clinical prediction of prognosis and immunotherapeutic responses in patients with ccRCC.
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spelling pubmed-106117232023-10-29 A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma Luo, Wang Lu, Jing Zheng, Xiang Wang, JinJing Qian, ShengYan Bai, ZhiXun Wu, MingSong Sci Rep Article Clear cell renal cell carcinoma (ccRCC) is regulated by methylation modifications and long noncoding RNAs (lncRNAs). However, knowledge of N(7)-methylguanosine (m(7)G)-related lncRNAs that predict ccRCC prognosis remains insufficient. A prognostic multi-lncRNA signature was created using LASSO regression to examine the differential expression of m7G-related lncRNAs in ccRCC. Furthermore, we performed Kaplan–Meier analysis and area under the curve (AUC) analysis for diagnosis. In all, a model based on five lncRNAs was developed. Principal component analysis (PCA) indicated that the risk model precisely separated the patients into different groups. The IC(50) value for drug sensitivity divided patients into two risk groups. High-risk group of patients was more susceptible to A.443654, A.770041, ABT.888, AMG.706, and AZ628. Moreover, a lower tumor mutation burden combined with low-risk scores was associated with a better prognosis of ccRCC. Quantitative real-time polymerase chain reaction (qRT-PCR) exhibited that the expression levels of LINC01507, AC093278.2 were very high in all five ccRCC cell lines, AC084876.1 was upregulated in all ccRCC cell lines except 786-O, and the levels of AL118508.1 and DUXAP8 were upregulated in the Caki-1 cell line. This risk model may be promising for the clinical prediction of prognosis and immunotherapeutic responses in patients with ccRCC. Nature Publishing Group UK 2023-10-27 /pmc/articles/PMC10611723/ /pubmed/37891201 http://dx.doi.org/10.1038/s41598-023-45287-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Luo, Wang
Lu, Jing
Zheng, Xiang
Wang, JinJing
Qian, ShengYan
Bai, ZhiXun
Wu, MingSong
A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma
title A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma
title_full A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma
title_fullStr A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma
title_full_unstemmed A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma
title_short A novel prognostic N(7)-methylguanosine-related long non-coding RNA signature in clear cell renal cell carcinoma
title_sort novel prognostic n(7)-methylguanosine-related long non-coding rna signature in clear cell renal cell carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10611723/
https://www.ncbi.nlm.nih.gov/pubmed/37891201
http://dx.doi.org/10.1038/s41598-023-45287-w
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