Cargando…
Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration
Severe Fever with thrombocytopenia syndrome (SFTS) is a highly fatal viral infectious disease that poses a significant threat to public health. Currently, the phase and pathogenesis of SFTS are not well understood, and there are no specific vaccines or effective treatment available. Therefore, it is...
Autores principales: | , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10612101/ https://www.ncbi.nlm.nih.gov/pubmed/37896902 http://dx.doi.org/10.3390/v15102126 |
_version_ | 1785128627797491712 |
---|---|
author | Huang, Tao Wang, Xueqi Mi, Yuqian Liu, Tiezhu Li, Yang Zhang, Ruixue Qian, Zhen Wen, Yanhan Li, Boyang Sun, Lina Wu, Wei Li, Jiandong Wang, Shiwen Liang, Mifang |
author_facet | Huang, Tao Wang, Xueqi Mi, Yuqian Liu, Tiezhu Li, Yang Zhang, Ruixue Qian, Zhen Wen, Yanhan Li, Boyang Sun, Lina Wu, Wei Li, Jiandong Wang, Shiwen Liang, Mifang |
author_sort | Huang, Tao |
collection | PubMed |
description | Severe Fever with thrombocytopenia syndrome (SFTS) is a highly fatal viral infectious disease that poses a significant threat to public health. Currently, the phase and pathogenesis of SFTS are not well understood, and there are no specific vaccines or effective treatment available. Therefore, it is crucial to identify biomarkers for diagnosing acute SFTS, which has a high mortality rate. In this study, we conducted differentially expressed genes (DEGs) analysis and WGCNA module analysis on the GSE144358 dataset, comparing the acute phase of SFTSV-infected patients with healthy individuals. Through the LASSO–Cox and random forest algorithms, a total of 2128 genes were analyzed, leading to the identification of four genes: ADIPOR1, CENPO, E2F2, and H2AC17. The GSEA analysis of these four genes demonstrated a significant correlation with immune cell function and cell cycle, aligning with the functional enrichment findings of DEGs. Furthermore, we also utilized CIBERSORT to analyze the immune cell infiltration and its correlation with characteristic genes. The results indicate that the combination of ADIPOR1, CENPO, E2F2, and H2AC17 genes has the potential as characteristic genes for diagnosing and studying the acute phase of SFTS virus (SFTSV) infection. |
format | Online Article Text |
id | pubmed-10612101 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106121012023-10-29 Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration Huang, Tao Wang, Xueqi Mi, Yuqian Liu, Tiezhu Li, Yang Zhang, Ruixue Qian, Zhen Wen, Yanhan Li, Boyang Sun, Lina Wu, Wei Li, Jiandong Wang, Shiwen Liang, Mifang Viruses Article Severe Fever with thrombocytopenia syndrome (SFTS) is a highly fatal viral infectious disease that poses a significant threat to public health. Currently, the phase and pathogenesis of SFTS are not well understood, and there are no specific vaccines or effective treatment available. Therefore, it is crucial to identify biomarkers for diagnosing acute SFTS, which has a high mortality rate. In this study, we conducted differentially expressed genes (DEGs) analysis and WGCNA module analysis on the GSE144358 dataset, comparing the acute phase of SFTSV-infected patients with healthy individuals. Through the LASSO–Cox and random forest algorithms, a total of 2128 genes were analyzed, leading to the identification of four genes: ADIPOR1, CENPO, E2F2, and H2AC17. The GSEA analysis of these four genes demonstrated a significant correlation with immune cell function and cell cycle, aligning with the functional enrichment findings of DEGs. Furthermore, we also utilized CIBERSORT to analyze the immune cell infiltration and its correlation with characteristic genes. The results indicate that the combination of ADIPOR1, CENPO, E2F2, and H2AC17 genes has the potential as characteristic genes for diagnosing and studying the acute phase of SFTS virus (SFTSV) infection. MDPI 2023-10-20 /pmc/articles/PMC10612101/ /pubmed/37896902 http://dx.doi.org/10.3390/v15102126 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Huang, Tao Wang, Xueqi Mi, Yuqian Liu, Tiezhu Li, Yang Zhang, Ruixue Qian, Zhen Wen, Yanhan Li, Boyang Sun, Lina Wu, Wei Li, Jiandong Wang, Shiwen Liang, Mifang Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration |
title | Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration |
title_full | Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration |
title_fullStr | Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration |
title_full_unstemmed | Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration |
title_short | Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration |
title_sort | identification and analysis of a four-gene set for diagnosing sfts virus infection based on machine learning methods and its association with immune cell infiltration |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10612101/ https://www.ncbi.nlm.nih.gov/pubmed/37896902 http://dx.doi.org/10.3390/v15102126 |
work_keys_str_mv | AT huangtao identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT wangxueqi identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT miyuqian identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT liutiezhu identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT liyang identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT zhangruixue identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT qianzhen identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT wenyanhan identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT liboyang identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT sunlina identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT wuwei identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT lijiandong identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT wangshiwen identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration AT liangmifang identificationandanalysisofafourgenesetfordiagnosingsftsvirusinfectionbasedonmachinelearningmethodsanditsassociationwithimmunecellinfiltration |