Cargando…

Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers

INTRODUCTION: Ferroptosis, a crucial type of programmed cell death, is directly linked to various cardiac disorders. However, the contribution of ferroptosis-related genes (FRGs) to Takotsubo syndrome (TTS) has not been completely understood. PURPOSE: The objective of this study was to investigate t...

Descripción completa

Detalles Bibliográficos
Autores principales: Huai, Hongyu, Li, Junliang, Zhang, Xiangjie, Xu, Qiang, Lan, Huan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10612482/
https://www.ncbi.nlm.nih.gov/pubmed/37901384
http://dx.doi.org/10.2147/JIR.S423544
_version_ 1785128710822690816
author Huai, Hongyu
Li, Junliang
Zhang, Xiangjie
Xu, Qiang
Lan, Huan
author_facet Huai, Hongyu
Li, Junliang
Zhang, Xiangjie
Xu, Qiang
Lan, Huan
author_sort Huai, Hongyu
collection PubMed
description INTRODUCTION: Ferroptosis, a crucial type of programmed cell death, is directly linked to various cardiac disorders. However, the contribution of ferroptosis-related genes (FRGs) to Takotsubo syndrome (TTS) has not been completely understood. PURPOSE: The objective of this study was to investigate the relationship between the FRGs and TTS. METHODS: TTS rat models were established by isoprenaline injection. Heart tissues were subsequently harvested for total RNA extraction and library construction. Transcriptome data wereobtained transcriptome data for TTS and FRGs from our laboratory, and sources such as the Ferroptosis Database (FerrDb) and the Gene Expression Omnibus Database (GEO). 57 differentially expressed FRGs (DE-FRGs) were discovered. The LASSO and SVM-RFE algorithms were employed to identify Enpp2, Pla2g6, Etv4, and Il1b as marker genes, and logistic regression was applied to construct a diagnostic model. The important genes were validated by real time PCR and the external dataset. Finally, the extent of immune infiltration was explored. RESULTS: Among the 57 genes, there were 36 up-regulated and 21 down-regulated genes that exhibited distinct expression patterns in the TTS and healthy control samples. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that the enriched pathways were primarily associated with pathways of neurodegeneration-multiple disease, while Gene Ontology (GO) analysis revealed that these genes were primarily linked to cellular response to external stimuli, outer membrane functions, and ubiquitin protein ligase binding. After the identification of four marker genes as potentially effective biomarkers for TTS diagnosis, subsequent logistic regression modeling revealed a receiver operating characteristic curve (ROC) with an AUC of 1.0. The examination of immune cell infiltration showed significantly higher prevalence of activated CD4(+) T cells, mast cells, etc., in TTS. CONCLUSION: Our findings support the theoretical importance of ferroptosis in TTS, highlighting Enpp2, Pla2g6, Etv4, and Il1b as potential diagnostic and therapeutic biomarkers for TTS.
format Online
Article
Text
id pubmed-10612482
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Dove
record_format MEDLINE/PubMed
spelling pubmed-106124822023-10-29 Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers Huai, Hongyu Li, Junliang Zhang, Xiangjie Xu, Qiang Lan, Huan J Inflamm Res Original Research INTRODUCTION: Ferroptosis, a crucial type of programmed cell death, is directly linked to various cardiac disorders. However, the contribution of ferroptosis-related genes (FRGs) to Takotsubo syndrome (TTS) has not been completely understood. PURPOSE: The objective of this study was to investigate the relationship between the FRGs and TTS. METHODS: TTS rat models were established by isoprenaline injection. Heart tissues were subsequently harvested for total RNA extraction and library construction. Transcriptome data wereobtained transcriptome data for TTS and FRGs from our laboratory, and sources such as the Ferroptosis Database (FerrDb) and the Gene Expression Omnibus Database (GEO). 57 differentially expressed FRGs (DE-FRGs) were discovered. The LASSO and SVM-RFE algorithms were employed to identify Enpp2, Pla2g6, Etv4, and Il1b as marker genes, and logistic regression was applied to construct a diagnostic model. The important genes were validated by real time PCR and the external dataset. Finally, the extent of immune infiltration was explored. RESULTS: Among the 57 genes, there were 36 up-regulated and 21 down-regulated genes that exhibited distinct expression patterns in the TTS and healthy control samples. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that the enriched pathways were primarily associated with pathways of neurodegeneration-multiple disease, while Gene Ontology (GO) analysis revealed that these genes were primarily linked to cellular response to external stimuli, outer membrane functions, and ubiquitin protein ligase binding. After the identification of four marker genes as potentially effective biomarkers for TTS diagnosis, subsequent logistic regression modeling revealed a receiver operating characteristic curve (ROC) with an AUC of 1.0. The examination of immune cell infiltration showed significantly higher prevalence of activated CD4(+) T cells, mast cells, etc., in TTS. CONCLUSION: Our findings support the theoretical importance of ferroptosis in TTS, highlighting Enpp2, Pla2g6, Etv4, and Il1b as potential diagnostic and therapeutic biomarkers for TTS. Dove 2023-10-24 /pmc/articles/PMC10612482/ /pubmed/37901384 http://dx.doi.org/10.2147/JIR.S423544 Text en © 2023 Huai et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Huai, Hongyu
Li, Junliang
Zhang, Xiangjie
Xu, Qiang
Lan, Huan
Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers
title Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers
title_full Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers
title_fullStr Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers
title_full_unstemmed Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers
title_short Creation of a Rat Takotsubo Syndrome Model and Utilization of Machine Learning Algorithms for Screening Diagnostic Biomarkers
title_sort creation of a rat takotsubo syndrome model and utilization of machine learning algorithms for screening diagnostic biomarkers
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10612482/
https://www.ncbi.nlm.nih.gov/pubmed/37901384
http://dx.doi.org/10.2147/JIR.S423544
work_keys_str_mv AT huaihongyu creationofarattakotsubosyndromemodelandutilizationofmachinelearningalgorithmsforscreeningdiagnosticbiomarkers
AT lijunliang creationofarattakotsubosyndromemodelandutilizationofmachinelearningalgorithmsforscreeningdiagnosticbiomarkers
AT zhangxiangjie creationofarattakotsubosyndromemodelandutilizationofmachinelearningalgorithmsforscreeningdiagnosticbiomarkers
AT xuqiang creationofarattakotsubosyndromemodelandutilizationofmachinelearningalgorithmsforscreeningdiagnosticbiomarkers
AT lanhuan creationofarattakotsubosyndromemodelandutilizationofmachinelearningalgorithmsforscreeningdiagnosticbiomarkers