Cargando…
Federated learning for diagnosis of age-related macular degeneration
This paper presents a federated learning (FL) approach to train deep learning models for classifying age-related macular degeneration (AMD) using optical coherence tomography image data. We employ the use of residual network and vision transformer encoders for the normal vs. AMD binary classificatio...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10613107/ https://www.ncbi.nlm.nih.gov/pubmed/37901412 http://dx.doi.org/10.3389/fmed.2023.1259017 |
_version_ | 1785128754840862720 |
---|---|
author | Gholami, Sina Lim, Jennifer I. Leng, Theodore Ong, Sally Shin Yee Thompson, Atalie Carina Alam, Minhaj Nur |
author_facet | Gholami, Sina Lim, Jennifer I. Leng, Theodore Ong, Sally Shin Yee Thompson, Atalie Carina Alam, Minhaj Nur |
author_sort | Gholami, Sina |
collection | PubMed |
description | This paper presents a federated learning (FL) approach to train deep learning models for classifying age-related macular degeneration (AMD) using optical coherence tomography image data. We employ the use of residual network and vision transformer encoders for the normal vs. AMD binary classification, integrating four unique domain adaptation techniques to address domain shift issues caused by heterogeneous data distribution in different institutions. Experimental results indicate that FL strategies can achieve competitive performance similar to centralized models even though each local model has access to a portion of the training data. Notably, the Adaptive Personalization FL strategy stood out in our FL evaluations, consistently delivering high performance across all tests due to its additional local model. Furthermore, the study provides valuable insights into the efficacy of simpler architectures in image classification tasks, particularly in scenarios where data privacy and decentralization are critical using both encoders. It suggests future exploration into deeper models and other FL strategies for a more nuanced understanding of these models' performance. Data and code are available at https://github.com/QIAIUNCC/FL_UNCC_QIAI. |
format | Online Article Text |
id | pubmed-10613107 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106131072023-10-29 Federated learning for diagnosis of age-related macular degeneration Gholami, Sina Lim, Jennifer I. Leng, Theodore Ong, Sally Shin Yee Thompson, Atalie Carina Alam, Minhaj Nur Front Med (Lausanne) Medicine This paper presents a federated learning (FL) approach to train deep learning models for classifying age-related macular degeneration (AMD) using optical coherence tomography image data. We employ the use of residual network and vision transformer encoders for the normal vs. AMD binary classification, integrating four unique domain adaptation techniques to address domain shift issues caused by heterogeneous data distribution in different institutions. Experimental results indicate that FL strategies can achieve competitive performance similar to centralized models even though each local model has access to a portion of the training data. Notably, the Adaptive Personalization FL strategy stood out in our FL evaluations, consistently delivering high performance across all tests due to its additional local model. Furthermore, the study provides valuable insights into the efficacy of simpler architectures in image classification tasks, particularly in scenarios where data privacy and decentralization are critical using both encoders. It suggests future exploration into deeper models and other FL strategies for a more nuanced understanding of these models' performance. Data and code are available at https://github.com/QIAIUNCC/FL_UNCC_QIAI. Frontiers Media S.A. 2023-10-12 /pmc/articles/PMC10613107/ /pubmed/37901412 http://dx.doi.org/10.3389/fmed.2023.1259017 Text en Copyright © 2023 Gholami, Lim, Leng, Ong, Thompson and Alam. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Gholami, Sina Lim, Jennifer I. Leng, Theodore Ong, Sally Shin Yee Thompson, Atalie Carina Alam, Minhaj Nur Federated learning for diagnosis of age-related macular degeneration |
title | Federated learning for diagnosis of age-related macular degeneration |
title_full | Federated learning for diagnosis of age-related macular degeneration |
title_fullStr | Federated learning for diagnosis of age-related macular degeneration |
title_full_unstemmed | Federated learning for diagnosis of age-related macular degeneration |
title_short | Federated learning for diagnosis of age-related macular degeneration |
title_sort | federated learning for diagnosis of age-related macular degeneration |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10613107/ https://www.ncbi.nlm.nih.gov/pubmed/37901412 http://dx.doi.org/10.3389/fmed.2023.1259017 |
work_keys_str_mv | AT gholamisina federatedlearningfordiagnosisofagerelatedmaculardegeneration AT limjenniferi federatedlearningfordiagnosisofagerelatedmaculardegeneration AT lengtheodore federatedlearningfordiagnosisofagerelatedmaculardegeneration AT ongsallyshinyee federatedlearningfordiagnosisofagerelatedmaculardegeneration AT thompsonataliecarina federatedlearningfordiagnosisofagerelatedmaculardegeneration AT alamminhajnur federatedlearningfordiagnosisofagerelatedmaculardegeneration |