Cargando…
Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration
INTRODUCTION: Neovascular age-related macular degeneration (NVAMD) is a leading cause of severe vision impairment in the elderly. Aging is one of the most pivotal underlying molecular mechanisms of NVAMD. METHODS: In this study, we identified the potential aging-related genes involved in NVAMD. Cons...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
S. Karger AG
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10614246/ https://www.ncbi.nlm.nih.gov/pubmed/37604141 http://dx.doi.org/10.1159/000531287 |
_version_ | 1785128986701987840 |
---|---|
author | Wu, Jiali Jiang, Yuxin Sun, Junran Sun, Xiaodong |
author_facet | Wu, Jiali Jiang, Yuxin Sun, Junran Sun, Xiaodong |
author_sort | Wu, Jiali |
collection | PubMed |
description | INTRODUCTION: Neovascular age-related macular degeneration (NVAMD) is a leading cause of severe vision impairment in the elderly. Aging is one of the most pivotal underlying molecular mechanisms of NVAMD. METHODS: In this study, we identified the potential aging-related genes involved in NVAMD. Considering that noncoding RNAs are vital regulators of NVAMD progression, we further explored and constructed an aging-originated circRNA-miRNA-mRNA network of NVAMD. Differential expression of 23 aging-associated genes was identified based on sequencing data and the Human Aging Genomic Resources tool at a threshold of p < 0.05, and log(2)|fold change| > 1. RESULTS: We screened 12 microRNAs (miRNAs) using public datasets and miRNet database. A total of 13 circRNAs were subsequently mined using the starBase tool. Merging these 13 circRNAs, 12 miRNAs, and 15 genes together, we obtained 281 pairs of circRNA-miRNA and 30 pairs of miRNA-mRNA. CONCLUSION: We created an aging-related circRNA-miRNA-mRNA network, which could be a promising target for future AMD treatments. |
format | Online Article Text |
id | pubmed-10614246 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | S. Karger AG |
record_format | MEDLINE/PubMed |
spelling | pubmed-106142462023-10-31 Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration Wu, Jiali Jiang, Yuxin Sun, Junran Sun, Xiaodong Gerontology Experimental Section: Research Article INTRODUCTION: Neovascular age-related macular degeneration (NVAMD) is a leading cause of severe vision impairment in the elderly. Aging is one of the most pivotal underlying molecular mechanisms of NVAMD. METHODS: In this study, we identified the potential aging-related genes involved in NVAMD. Considering that noncoding RNAs are vital regulators of NVAMD progression, we further explored and constructed an aging-originated circRNA-miRNA-mRNA network of NVAMD. Differential expression of 23 aging-associated genes was identified based on sequencing data and the Human Aging Genomic Resources tool at a threshold of p < 0.05, and log(2)|fold change| > 1. RESULTS: We screened 12 microRNAs (miRNAs) using public datasets and miRNet database. A total of 13 circRNAs were subsequently mined using the starBase tool. Merging these 13 circRNAs, 12 miRNAs, and 15 genes together, we obtained 281 pairs of circRNA-miRNA and 30 pairs of miRNA-mRNA. CONCLUSION: We created an aging-related circRNA-miRNA-mRNA network, which could be a promising target for future AMD treatments. S. Karger AG 2023-10 2023-08-21 /pmc/articles/PMC10614246/ /pubmed/37604141 http://dx.doi.org/10.1159/000531287 Text en Copyright © 2023 by The Author(s). Published by S. Karger AG, Basel https://creativecommons.org/licenses/by-nc/4.0/This article is licensed under the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC). Usage and distribution for commercial purposes requires written permission. |
spellingShingle | Experimental Section: Research Article Wu, Jiali Jiang, Yuxin Sun, Junran Sun, Xiaodong Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration |
title | Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration |
title_full | Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration |
title_fullStr | Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration |
title_full_unstemmed | Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration |
title_short | Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA Network in Neovascular Age-Related Macular Degeneration |
title_sort | identification and validation of an aging-associated circrna-mirna-mrna network in neovascular age-related macular degeneration |
topic | Experimental Section: Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10614246/ https://www.ncbi.nlm.nih.gov/pubmed/37604141 http://dx.doi.org/10.1159/000531287 |
work_keys_str_mv | AT wujiali identificationandvalidationofanagingassociatedcircrnamirnamrnanetworkinneovascularagerelatedmaculardegeneration AT jiangyuxin identificationandvalidationofanagingassociatedcircrnamirnamrnanetworkinneovascularagerelatedmaculardegeneration AT sunjunran identificationandvalidationofanagingassociatedcircrnamirnamrnanetworkinneovascularagerelatedmaculardegeneration AT sunxiaodong identificationandvalidationofanagingassociatedcircrnamirnamrnanetworkinneovascularagerelatedmaculardegeneration |