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Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor
The distinction between Parkinson’s disease (PD) and essential tremor (ET) tremors is subtle, posing challenges in differentiation. To accurately classify the PD and ET, BiLSTM-based recurrent neural networks are employed to classify between normal patients (N), PD patients, and ET patients using ac...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10616175/ https://www.ncbi.nlm.nih.gov/pubmed/37903843 http://dx.doi.org/10.1038/s41598-023-45802-z |
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author | Lee, Rui En Chan, Ping Yi |
author_facet | Lee, Rui En Chan, Ping Yi |
author_sort | Lee, Rui En |
collection | PubMed |
description | The distinction between Parkinson’s disease (PD) and essential tremor (ET) tremors is subtle, posing challenges in differentiation. To accurately classify the PD and ET, BiLSTM-based recurrent neural networks are employed to classify between normal patients (N), PD patients, and ET patients using accelerometry data on their lower arm (L), hand (H), and upper arm (U) as inputs. The trained recurrent neural network (RNN) has reached 80% accuracy. The neural network is analyzed using layer-wise relevance propagation (LRP) to understand the internal workings of the neural network. A novel explainable AI method, called LRP-based approximate linear weights (ALW), is introduced to identify the similarities in relevance when assigning the class scores in the neural network. The ALW functions as a 2D kernel that linearly transforms the input data directly into the class scores, which significantly reduces the complexity of analyzing the neural network. This new classification method reconstructs the neural network’s original function, achieving a 73% PD and ET tremor classification accuracy. By analyzing the ALWs, the correlation between each input and the class can also be determined. Then, the differentiating features can be subsequently identified. Since the input is preprocessed using short-time Fourier transform (STFT), the differences between the magnitude of tremor frequencies ranging from 3 to 30 Hz in the mean N, PD, and ET subjects are successfully identified. Aside from matching the current medical knowledge on frequency content in the tremors, the differentiating features also provide insights about frequency contents in the tremors in other frequency bands and body parts. |
format | Online Article Text |
id | pubmed-10616175 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106161752023-11-01 Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor Lee, Rui En Chan, Ping Yi Sci Rep Article The distinction between Parkinson’s disease (PD) and essential tremor (ET) tremors is subtle, posing challenges in differentiation. To accurately classify the PD and ET, BiLSTM-based recurrent neural networks are employed to classify between normal patients (N), PD patients, and ET patients using accelerometry data on their lower arm (L), hand (H), and upper arm (U) as inputs. The trained recurrent neural network (RNN) has reached 80% accuracy. The neural network is analyzed using layer-wise relevance propagation (LRP) to understand the internal workings of the neural network. A novel explainable AI method, called LRP-based approximate linear weights (ALW), is introduced to identify the similarities in relevance when assigning the class scores in the neural network. The ALW functions as a 2D kernel that linearly transforms the input data directly into the class scores, which significantly reduces the complexity of analyzing the neural network. This new classification method reconstructs the neural network’s original function, achieving a 73% PD and ET tremor classification accuracy. By analyzing the ALWs, the correlation between each input and the class can also be determined. Then, the differentiating features can be subsequently identified. Since the input is preprocessed using short-time Fourier transform (STFT), the differences between the magnitude of tremor frequencies ranging from 3 to 30 Hz in the mean N, PD, and ET subjects are successfully identified. Aside from matching the current medical knowledge on frequency content in the tremors, the differentiating features also provide insights about frequency contents in the tremors in other frequency bands and body parts. Nature Publishing Group UK 2023-10-30 /pmc/articles/PMC10616175/ /pubmed/37903843 http://dx.doi.org/10.1038/s41598-023-45802-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lee, Rui En Chan, Ping Yi Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor |
title | Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor |
title_full | Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor |
title_fullStr | Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor |
title_full_unstemmed | Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor |
title_short | Explainable artificial intelligence for searching frequency characteristics in Parkinson’s disease tremor |
title_sort | explainable artificial intelligence for searching frequency characteristics in parkinson’s disease tremor |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10616175/ https://www.ncbi.nlm.nih.gov/pubmed/37903843 http://dx.doi.org/10.1038/s41598-023-45802-z |
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