Cargando…
Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells
BACKGROUND: Multiparameter flow cytometry (FC) immunophenotyping is a key tool for detailed identification and characterization of human blood leucocytes, including B-lymphocytes and plasma cells (PC). However, currently used conventional data analysis strategies require extensive expertise, are tim...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10616957/ https://www.ncbi.nlm.nih.gov/pubmed/37915569 http://dx.doi.org/10.3389/fimmu.2023.1268686 |
_version_ | 1785129501681778688 |
---|---|
author | Delgado, Alejandro H. Fluxa, Rafael Perez-Andres, Martin Diks, Annieck M. van Gaans-van den Brink, Jacqueline A. M. Barkoff, Alex-Mikael Blanco, Elena Torres-Valle, Alba Berkowska, Magdalena A. Grigore, Georgiana van Dongen, J .J .M. Orfao, Alberto |
author_facet | Delgado, Alejandro H. Fluxa, Rafael Perez-Andres, Martin Diks, Annieck M. van Gaans-van den Brink, Jacqueline A. M. Barkoff, Alex-Mikael Blanco, Elena Torres-Valle, Alba Berkowska, Magdalena A. Grigore, Georgiana van Dongen, J .J .M. Orfao, Alberto |
author_sort | Delgado, Alejandro H. |
collection | PubMed |
description | BACKGROUND: Multiparameter flow cytometry (FC) immunophenotyping is a key tool for detailed identification and characterization of human blood leucocytes, including B-lymphocytes and plasma cells (PC). However, currently used conventional data analysis strategies require extensive expertise, are time consuming, and show limited reproducibility. OBJECTIVE: Here, we designed, constructed and validated an automated database-guided gating and identification (AGI) approach for fast and standardized in-depth dissection of B-lymphocyte and PC populations in human blood. METHODS: For this purpose, 213 FC standard (FCS) datafiles corresponding to umbilical cord and peripheral blood samples from healthy and patient volunteers, stained with the 14-color 18-antibody EuroFlow BIgH-IMM panel, were used. RESULTS: The BIgH-IMM antibody panel allowed identification of 117 different B-lymphocyte and PC subsets. Samples from 36 healthy donors were stained and 14 of the datafiles that fulfilled strict inclusion criteria were analysed by an expert flow cytometrist to build the EuroFlow BIgH-IMM database. Data contained in the datafiles was then merged into a reference database that was uploaded in the Infinicyt software (Cytognos, Salamanca, Spain). Subsequently, we compared the results of manual gating (MG) with the performance of two classification algorithms -hierarchical algorithm vs two-step algorithm- for AGI of the cell populations present in 5 randomly selected FCS datafiles. The hierarchical AGI algorithm showed higher correlation values vs conventional MG (r(2) of 0.94 vs. 0.88 for the two-step AGI algorithm) and was further validated in a set of 177 FCS datafiles against conventional expert-based MG. For virtually all identifiable cell populations a highly significant correlation was observed between the two approaches (r(2)>0.81 for 79% of all B-cell populations identified), with a significantly lower median time of analysis per sample (6 vs. 40 min, p=0.001) for the AGI tool vs. MG, respectively and both intra-sample (median CV of 1.7% vs. 10.4% by MG, p<0.001) and inter-expert (median CV of 3.9% vs. 17.3% by MG by 2 experts, p<0.001) variability. CONCLUSION: Our results show that compared to conventional FC data analysis strategies, the here proposed AGI tool is a faster, more robust, reproducible, and standardized approach for in-depth analysis of B-lymphocyte and PC subsets circulating in human blood. |
format | Online Article Text |
id | pubmed-10616957 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106169572023-11-01 Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells Delgado, Alejandro H. Fluxa, Rafael Perez-Andres, Martin Diks, Annieck M. van Gaans-van den Brink, Jacqueline A. M. Barkoff, Alex-Mikael Blanco, Elena Torres-Valle, Alba Berkowska, Magdalena A. Grigore, Georgiana van Dongen, J .J .M. Orfao, Alberto Front Immunol Immunology BACKGROUND: Multiparameter flow cytometry (FC) immunophenotyping is a key tool for detailed identification and characterization of human blood leucocytes, including B-lymphocytes and plasma cells (PC). However, currently used conventional data analysis strategies require extensive expertise, are time consuming, and show limited reproducibility. OBJECTIVE: Here, we designed, constructed and validated an automated database-guided gating and identification (AGI) approach for fast and standardized in-depth dissection of B-lymphocyte and PC populations in human blood. METHODS: For this purpose, 213 FC standard (FCS) datafiles corresponding to umbilical cord and peripheral blood samples from healthy and patient volunteers, stained with the 14-color 18-antibody EuroFlow BIgH-IMM panel, were used. RESULTS: The BIgH-IMM antibody panel allowed identification of 117 different B-lymphocyte and PC subsets. Samples from 36 healthy donors were stained and 14 of the datafiles that fulfilled strict inclusion criteria were analysed by an expert flow cytometrist to build the EuroFlow BIgH-IMM database. Data contained in the datafiles was then merged into a reference database that was uploaded in the Infinicyt software (Cytognos, Salamanca, Spain). Subsequently, we compared the results of manual gating (MG) with the performance of two classification algorithms -hierarchical algorithm vs two-step algorithm- for AGI of the cell populations present in 5 randomly selected FCS datafiles. The hierarchical AGI algorithm showed higher correlation values vs conventional MG (r(2) of 0.94 vs. 0.88 for the two-step AGI algorithm) and was further validated in a set of 177 FCS datafiles against conventional expert-based MG. For virtually all identifiable cell populations a highly significant correlation was observed between the two approaches (r(2)>0.81 for 79% of all B-cell populations identified), with a significantly lower median time of analysis per sample (6 vs. 40 min, p=0.001) for the AGI tool vs. MG, respectively and both intra-sample (median CV of 1.7% vs. 10.4% by MG, p<0.001) and inter-expert (median CV of 3.9% vs. 17.3% by MG by 2 experts, p<0.001) variability. CONCLUSION: Our results show that compared to conventional FC data analysis strategies, the here proposed AGI tool is a faster, more robust, reproducible, and standardized approach for in-depth analysis of B-lymphocyte and PC subsets circulating in human blood. Frontiers Media S.A. 2023-10-17 /pmc/articles/PMC10616957/ /pubmed/37915569 http://dx.doi.org/10.3389/fimmu.2023.1268686 Text en Copyright © 2023 Delgado, Fluxa, Perez-Andres, Diks, van Gaans-van den Brink, Barkoff, Blanco, Torres-Valle, Berkowska, Grigore, van Dongen and Orfao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Delgado, Alejandro H. Fluxa, Rafael Perez-Andres, Martin Diks, Annieck M. van Gaans-van den Brink, Jacqueline A. M. Barkoff, Alex-Mikael Blanco, Elena Torres-Valle, Alba Berkowska, Magdalena A. Grigore, Georgiana van Dongen, J .J .M. Orfao, Alberto Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells |
title | Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells |
title_full | Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells |
title_fullStr | Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells |
title_full_unstemmed | Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells |
title_short | Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells |
title_sort | automated euroflow approach for standardized in-depth dissection of human circulating b-cells and plasma cells |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10616957/ https://www.ncbi.nlm.nih.gov/pubmed/37915569 http://dx.doi.org/10.3389/fimmu.2023.1268686 |
work_keys_str_mv | AT delgadoalejandroh automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT fluxarafael automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT perezandresmartin automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT diksannieckm automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT vangaansvandenbrinkjacquelineam automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT barkoffalexmikael automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT blancoelena automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT torresvallealba automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT berkowskamagdalenaa automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT grigoregeorgiana automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT vandongenjjm automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells AT orfaoalberto automatedeuroflowapproachforstandardizedindepthdissectionofhumancirculatingbcellsandplasmacells |