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FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes

PREMISE: Field images are important sources of information for research in the natural sciences. However, images that lack photogrammetric scale bars, including most iNaturalist observations, cannot yield accurate trait measurements. We introduce FieldPrism, a novel system of photogrammetric markers...

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Detalles Bibliográficos
Autores principales: Weaver, William N., Smith, Stephen A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617303/
https://www.ncbi.nlm.nih.gov/pubmed/37915427
http://dx.doi.org/10.1002/aps3.11545
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author Weaver, William N.
Smith, Stephen A.
author_facet Weaver, William N.
Smith, Stephen A.
author_sort Weaver, William N.
collection PubMed
description PREMISE: Field images are important sources of information for research in the natural sciences. However, images that lack photogrammetric scale bars, including most iNaturalist observations, cannot yield accurate trait measurements. We introduce FieldPrism, a novel system of photogrammetric markers, QR codes, and software to automate the curation of snapshot vouchers. METHODS AND RESULTS: Our photogrammetric background templates (FieldSheets) increase the utility of field images by providing machine‐readable scale bars and photogrammetric reference points to automatically correct image distortion and calculate a pixel‐to‐metric conversion ratio. Users can generate a QR code flipbook derived from a specimen identifier naming hierarchy, enabling machine‐readable specimen identification for automatic file renaming. We also developed FieldStation, a Raspberry Pi–based mobile imaging apparatus that records images, GPS location, and metadata redundantly on up to four USB storage devices and can be monitored and controlled from any Wi‐Fi connected device. CONCLUSIONS: FieldPrism is a flexible software tool designed to standardize and improve the utility of images captured in the field. When paired with the optional FieldStation, researchers can create a self‐contained mobile imaging apparatus for quantitative trait data collection.
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spelling pubmed-106173032023-11-01 FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes Weaver, William N. Smith, Stephen A. Appl Plant Sci Software Note PREMISE: Field images are important sources of information for research in the natural sciences. However, images that lack photogrammetric scale bars, including most iNaturalist observations, cannot yield accurate trait measurements. We introduce FieldPrism, a novel system of photogrammetric markers, QR codes, and software to automate the curation of snapshot vouchers. METHODS AND RESULTS: Our photogrammetric background templates (FieldSheets) increase the utility of field images by providing machine‐readable scale bars and photogrammetric reference points to automatically correct image distortion and calculate a pixel‐to‐metric conversion ratio. Users can generate a QR code flipbook derived from a specimen identifier naming hierarchy, enabling machine‐readable specimen identification for automatic file renaming. We also developed FieldStation, a Raspberry Pi–based mobile imaging apparatus that records images, GPS location, and metadata redundantly on up to four USB storage devices and can be monitored and controlled from any Wi‐Fi connected device. CONCLUSIONS: FieldPrism is a flexible software tool designed to standardize and improve the utility of images captured in the field. When paired with the optional FieldStation, researchers can create a self‐contained mobile imaging apparatus for quantitative trait data collection. John Wiley and Sons Inc. 2023-09-28 /pmc/articles/PMC10617303/ /pubmed/37915427 http://dx.doi.org/10.1002/aps3.11545 Text en © 2023 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Software Note
Weaver, William N.
Smith, Stephen A.
FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes
title FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes
title_full FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes
title_fullStr FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes
title_full_unstemmed FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes
title_short FieldPrism: A system for creating snapshot vouchers from field images using photogrammetric markers and QR codes
title_sort fieldprism: a system for creating snapshot vouchers from field images using photogrammetric markers and qr codes
topic Software Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617303/
https://www.ncbi.nlm.nih.gov/pubmed/37915427
http://dx.doi.org/10.1002/aps3.11545
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