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Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
PREMISE: We recognized the need for a customized imaging protocol for plant specimens at the time of collection for the purpose of three‐dimensional (3D) modeling, as well as the lack of a broadly applicable photogrammetry protocol that encompasses the heterogeneity of plant specimen geometries and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617317/ https://www.ncbi.nlm.nih.gov/pubmed/37915433 http://dx.doi.org/10.1002/aps3.11547 |
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author | James, Nicole Adkinson, Alex Mast, Austin |
author_facet | James, Nicole Adkinson, Alex Mast, Austin |
author_sort | James, Nicole |
collection | PubMed |
description | PREMISE: We recognized the need for a customized imaging protocol for plant specimens at the time of collection for the purpose of three‐dimensional (3D) modeling, as well as the lack of a broadly applicable photogrammetry protocol that encompasses the heterogeneity of plant specimen geometries and the challenges introduced by processes such as wilting. METHODS AND RESULTS: We developed an equipment list and set of detailed protocols describing how to capture images of plant specimens in the field prior to their deformation (e.g., with pressing) and how to produce a 3D model from the image sets in Agisoft Metashape Professional. CONCLUSIONS: The equipment list and protocols represent a foundation on which additional improvements can be made for specimen geometries outside of the range of the six types considered, and an easy entry into photogrammetry for those who have not previously used it. |
format | Online Article Text |
id | pubmed-10617317 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106173172023-11-01 Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens James, Nicole Adkinson, Alex Mast, Austin Appl Plant Sci Protocol Note PREMISE: We recognized the need for a customized imaging protocol for plant specimens at the time of collection for the purpose of three‐dimensional (3D) modeling, as well as the lack of a broadly applicable photogrammetry protocol that encompasses the heterogeneity of plant specimen geometries and the challenges introduced by processes such as wilting. METHODS AND RESULTS: We developed an equipment list and set of detailed protocols describing how to capture images of plant specimens in the field prior to their deformation (e.g., with pressing) and how to produce a 3D model from the image sets in Agisoft Metashape Professional. CONCLUSIONS: The equipment list and protocols represent a foundation on which additional improvements can be made for specimen geometries outside of the range of the six types considered, and an easy entry into photogrammetry for those who have not previously used it. John Wiley and Sons Inc. 2023-10-16 /pmc/articles/PMC10617317/ /pubmed/37915433 http://dx.doi.org/10.1002/aps3.11547 Text en © 2023 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Protocol Note James, Nicole Adkinson, Alex Mast, Austin Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
title | Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
title_full | Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
title_fullStr | Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
title_full_unstemmed | Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
title_short | Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
title_sort | rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens |
topic | Protocol Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617317/ https://www.ncbi.nlm.nih.gov/pubmed/37915433 http://dx.doi.org/10.1002/aps3.11547 |
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