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Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens

PREMISE: We recognized the need for a customized imaging protocol for plant specimens at the time of collection for the purpose of three‐dimensional (3D) modeling, as well as the lack of a broadly applicable photogrammetry protocol that encompasses the heterogeneity of plant specimen geometries and...

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Detalles Bibliográficos
Autores principales: James, Nicole, Adkinson, Alex, Mast, Austin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617317/
https://www.ncbi.nlm.nih.gov/pubmed/37915433
http://dx.doi.org/10.1002/aps3.11547
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author James, Nicole
Adkinson, Alex
Mast, Austin
author_facet James, Nicole
Adkinson, Alex
Mast, Austin
author_sort James, Nicole
collection PubMed
description PREMISE: We recognized the need for a customized imaging protocol for plant specimens at the time of collection for the purpose of three‐dimensional (3D) modeling, as well as the lack of a broadly applicable photogrammetry protocol that encompasses the heterogeneity of plant specimen geometries and the challenges introduced by processes such as wilting. METHODS AND RESULTS: We developed an equipment list and set of detailed protocols describing how to capture images of plant specimens in the field prior to their deformation (e.g., with pressing) and how to produce a 3D model from the image sets in Agisoft Metashape Professional. CONCLUSIONS: The equipment list and protocols represent a foundation on which additional improvements can be made for specimen geometries outside of the range of the six types considered, and an easy entry into photogrammetry for those who have not previously used it.
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spelling pubmed-106173172023-11-01 Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens James, Nicole Adkinson, Alex Mast, Austin Appl Plant Sci Protocol Note PREMISE: We recognized the need for a customized imaging protocol for plant specimens at the time of collection for the purpose of three‐dimensional (3D) modeling, as well as the lack of a broadly applicable photogrammetry protocol that encompasses the heterogeneity of plant specimen geometries and the challenges introduced by processes such as wilting. METHODS AND RESULTS: We developed an equipment list and set of detailed protocols describing how to capture images of plant specimens in the field prior to their deformation (e.g., with pressing) and how to produce a 3D model from the image sets in Agisoft Metashape Professional. CONCLUSIONS: The equipment list and protocols represent a foundation on which additional improvements can be made for specimen geometries outside of the range of the six types considered, and an easy entry into photogrammetry for those who have not previously used it. John Wiley and Sons Inc. 2023-10-16 /pmc/articles/PMC10617317/ /pubmed/37915433 http://dx.doi.org/10.1002/aps3.11547 Text en © 2023 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Protocol Note
James, Nicole
Adkinson, Alex
Mast, Austin
Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
title Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
title_full Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
title_fullStr Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
title_full_unstemmed Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
title_short Rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
title_sort rapid imaging in the field followed by photogrammetry digitally captures the otherwise lost dimensions of plant specimens
topic Protocol Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617317/
https://www.ncbi.nlm.nih.gov/pubmed/37915433
http://dx.doi.org/10.1002/aps3.11547
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