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A pipeline for the rapid collection of color data from photographs
PREMISE: There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales. METHODS: We developed an R shiny pipeline to sample color fr...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617320/ https://www.ncbi.nlm.nih.gov/pubmed/37915431 http://dx.doi.org/10.1002/aps3.11546 |
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author | Luong, Yvonne Gasca‐Herrera, Ariel Misiewicz, Tracy M. Carter, Benjamin E. |
author_facet | Luong, Yvonne Gasca‐Herrera, Ariel Misiewicz, Tracy M. Carter, Benjamin E. |
author_sort | Luong, Yvonne |
collection | PubMed |
description | PREMISE: There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales. METHODS: We developed an R shiny pipeline to sample color from images that were automatically downloaded using query results from a search using iNaturalist or the Global Biodiversity Information Facility (GBIF). The pipeline was used to sample ca. 4800 North American wallflower (Erysimum, Brassicaceae) images from iNaturalist. We tested whether flower color was distributed non‐randomly across the landscape and whether spatial patterns were correlated with climate. We also used images including ColorCheckers to compare analyses of raw images to color‐calibrated images. RESULTS: Flower color was strongly non‐randomly distributed spatially, but did not correlate strongly with climate, with most of the variation explained instead by spatial autocorrelation. However, finer‐scale patterns including local correlations between elevation and color were observed. Analyses using color‐calibrated and raw images revealed similar results. DISCUSSION: This pipeline provides users the ability to rapidly capture color data from iNaturalist images and can be a useful tool in detecting spatial or temporal changes in color using citizen science data. |
format | Online Article Text |
id | pubmed-10617320 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106173202023-11-01 A pipeline for the rapid collection of color data from photographs Luong, Yvonne Gasca‐Herrera, Ariel Misiewicz, Tracy M. Carter, Benjamin E. Appl Plant Sci Application Articles PREMISE: There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales. METHODS: We developed an R shiny pipeline to sample color from images that were automatically downloaded using query results from a search using iNaturalist or the Global Biodiversity Information Facility (GBIF). The pipeline was used to sample ca. 4800 North American wallflower (Erysimum, Brassicaceae) images from iNaturalist. We tested whether flower color was distributed non‐randomly across the landscape and whether spatial patterns were correlated with climate. We also used images including ColorCheckers to compare analyses of raw images to color‐calibrated images. RESULTS: Flower color was strongly non‐randomly distributed spatially, but did not correlate strongly with climate, with most of the variation explained instead by spatial autocorrelation. However, finer‐scale patterns including local correlations between elevation and color were observed. Analyses using color‐calibrated and raw images revealed similar results. DISCUSSION: This pipeline provides users the ability to rapidly capture color data from iNaturalist images and can be a useful tool in detecting spatial or temporal changes in color using citizen science data. John Wiley and Sons Inc. 2023-10-06 /pmc/articles/PMC10617320/ /pubmed/37915431 http://dx.doi.org/10.1002/aps3.11546 Text en © 2023 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Application Articles Luong, Yvonne Gasca‐Herrera, Ariel Misiewicz, Tracy M. Carter, Benjamin E. A pipeline for the rapid collection of color data from photographs |
title | A pipeline for the rapid collection of color data from photographs |
title_full | A pipeline for the rapid collection of color data from photographs |
title_fullStr | A pipeline for the rapid collection of color data from photographs |
title_full_unstemmed | A pipeline for the rapid collection of color data from photographs |
title_short | A pipeline for the rapid collection of color data from photographs |
title_sort | pipeline for the rapid collection of color data from photographs |
topic | Application Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617320/ https://www.ncbi.nlm.nih.gov/pubmed/37915431 http://dx.doi.org/10.1002/aps3.11546 |
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