Cargando…

A pipeline for the rapid collection of color data from photographs

PREMISE: There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales. METHODS: We developed an R shiny pipeline to sample color fr...

Descripción completa

Detalles Bibliográficos
Autores principales: Luong, Yvonne, Gasca‐Herrera, Ariel, Misiewicz, Tracy M., Carter, Benjamin E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617320/
https://www.ncbi.nlm.nih.gov/pubmed/37915431
http://dx.doi.org/10.1002/aps3.11546
_version_ 1785129584751017984
author Luong, Yvonne
Gasca‐Herrera, Ariel
Misiewicz, Tracy M.
Carter, Benjamin E.
author_facet Luong, Yvonne
Gasca‐Herrera, Ariel
Misiewicz, Tracy M.
Carter, Benjamin E.
author_sort Luong, Yvonne
collection PubMed
description PREMISE: There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales. METHODS: We developed an R shiny pipeline to sample color from images that were automatically downloaded using query results from a search using iNaturalist or the Global Biodiversity Information Facility (GBIF). The pipeline was used to sample ca. 4800 North American wallflower (Erysimum, Brassicaceae) images from iNaturalist. We tested whether flower color was distributed non‐randomly across the landscape and whether spatial patterns were correlated with climate. We also used images including ColorCheckers to compare analyses of raw images to color‐calibrated images. RESULTS: Flower color was strongly non‐randomly distributed spatially, but did not correlate strongly with climate, with most of the variation explained instead by spatial autocorrelation. However, finer‐scale patterns including local correlations between elevation and color were observed. Analyses using color‐calibrated and raw images revealed similar results. DISCUSSION: This pipeline provides users the ability to rapidly capture color data from iNaturalist images and can be a useful tool in detecting spatial or temporal changes in color using citizen science data.
format Online
Article
Text
id pubmed-10617320
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-106173202023-11-01 A pipeline for the rapid collection of color data from photographs Luong, Yvonne Gasca‐Herrera, Ariel Misiewicz, Tracy M. Carter, Benjamin E. Appl Plant Sci Application Articles PREMISE: There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales. METHODS: We developed an R shiny pipeline to sample color from images that were automatically downloaded using query results from a search using iNaturalist or the Global Biodiversity Information Facility (GBIF). The pipeline was used to sample ca. 4800 North American wallflower (Erysimum, Brassicaceae) images from iNaturalist. We tested whether flower color was distributed non‐randomly across the landscape and whether spatial patterns were correlated with climate. We also used images including ColorCheckers to compare analyses of raw images to color‐calibrated images. RESULTS: Flower color was strongly non‐randomly distributed spatially, but did not correlate strongly with climate, with most of the variation explained instead by spatial autocorrelation. However, finer‐scale patterns including local correlations between elevation and color were observed. Analyses using color‐calibrated and raw images revealed similar results. DISCUSSION: This pipeline provides users the ability to rapidly capture color data from iNaturalist images and can be a useful tool in detecting spatial or temporal changes in color using citizen science data. John Wiley and Sons Inc. 2023-10-06 /pmc/articles/PMC10617320/ /pubmed/37915431 http://dx.doi.org/10.1002/aps3.11546 Text en © 2023 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Application Articles
Luong, Yvonne
Gasca‐Herrera, Ariel
Misiewicz, Tracy M.
Carter, Benjamin E.
A pipeline for the rapid collection of color data from photographs
title A pipeline for the rapid collection of color data from photographs
title_full A pipeline for the rapid collection of color data from photographs
title_fullStr A pipeline for the rapid collection of color data from photographs
title_full_unstemmed A pipeline for the rapid collection of color data from photographs
title_short A pipeline for the rapid collection of color data from photographs
title_sort pipeline for the rapid collection of color data from photographs
topic Application Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617320/
https://www.ncbi.nlm.nih.gov/pubmed/37915431
http://dx.doi.org/10.1002/aps3.11546
work_keys_str_mv AT luongyvonne apipelinefortherapidcollectionofcolordatafromphotographs
AT gascaherreraariel apipelinefortherapidcollectionofcolordatafromphotographs
AT misiewicztracym apipelinefortherapidcollectionofcolordatafromphotographs
AT carterbenjamine apipelinefortherapidcollectionofcolordatafromphotographs
AT luongyvonne pipelinefortherapidcollectionofcolordatafromphotographs
AT gascaherreraariel pipelinefortherapidcollectionofcolordatafromphotographs
AT misiewicztracym pipelinefortherapidcollectionofcolordatafromphotographs
AT carterbenjamine pipelinefortherapidcollectionofcolordatafromphotographs