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Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage

Prevalence of carbapenem-resistant Klebsiella pneumoniae (CRKP) has compromised antimicrobial efficacy against severe infections worldwide. To monitor global spread, we conducted a comprehensive genomic epidemiologic study comparing sequences from 21 bla(OXA-232)–carrying CRKP isolates from China wi...

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Autores principales: Wu, Yuye, Jiang, Tian, He, Xianhong, Shao, Jiayu, Wu, Chenghao, Mao, Weifang, Jia, Huiqiong, He, Fang, Kong, Yingying, Wu, Jianyong, Sun, Qingyang, Sun, Long, Draz, Mohamed S., Xie, Xinyou, Zhang, Jun, Ruan, Zhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Centers for Disease Control and Prevention 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617323/
https://www.ncbi.nlm.nih.gov/pubmed/37877525
http://dx.doi.org/10.3201/eid2911.230463
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author Wu, Yuye
Jiang, Tian
He, Xianhong
Shao, Jiayu
Wu, Chenghao
Mao, Weifang
Jia, Huiqiong
He, Fang
Kong, Yingying
Wu, Jianyong
Sun, Qingyang
Sun, Long
Draz, Mohamed S.
Xie, Xinyou
Zhang, Jun
Ruan, Zhi
author_facet Wu, Yuye
Jiang, Tian
He, Xianhong
Shao, Jiayu
Wu, Chenghao
Mao, Weifang
Jia, Huiqiong
He, Fang
Kong, Yingying
Wu, Jianyong
Sun, Qingyang
Sun, Long
Draz, Mohamed S.
Xie, Xinyou
Zhang, Jun
Ruan, Zhi
author_sort Wu, Yuye
collection PubMed
description Prevalence of carbapenem-resistant Klebsiella pneumoniae (CRKP) has compromised antimicrobial efficacy against severe infections worldwide. To monitor global spread, we conducted a comprehensive genomic epidemiologic study comparing sequences from 21 bla(OXA-232)–carrying CRKP isolates from China with K. pneumoniae sequence type (ST) 15 strains from 68 countries available in GenBank. Phylogenetic and phylogeographic analyses revealed all bla(OXA-232)–carrying CRKP isolates belonged to ST15 lineage and exhibited multidrug resistance. Analysis grouped 330 global bla(OXA-232)–carrying ST15 CRKP strains into 5 clades, indicating clonal transmission with small genetic distances among multiple strains. The lineage originated in the United States, then spread to Europe, Asia, Oceania, and Africa. Most recent common ancestor was traced back to 2000; mutations averaged ≈1.7 per year per genome. Our research helps identify key forces driving global spread of bla(OXA-232)–carrying CRKP ST15 lineage and emphasizes the importance of ongoing surveillance of epidemic CRKP.
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spelling pubmed-106173232023-11-01 Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage Wu, Yuye Jiang, Tian He, Xianhong Shao, Jiayu Wu, Chenghao Mao, Weifang Jia, Huiqiong He, Fang Kong, Yingying Wu, Jianyong Sun, Qingyang Sun, Long Draz, Mohamed S. Xie, Xinyou Zhang, Jun Ruan, Zhi Emerg Infect Dis Research Prevalence of carbapenem-resistant Klebsiella pneumoniae (CRKP) has compromised antimicrobial efficacy against severe infections worldwide. To monitor global spread, we conducted a comprehensive genomic epidemiologic study comparing sequences from 21 bla(OXA-232)–carrying CRKP isolates from China with K. pneumoniae sequence type (ST) 15 strains from 68 countries available in GenBank. Phylogenetic and phylogeographic analyses revealed all bla(OXA-232)–carrying CRKP isolates belonged to ST15 lineage and exhibited multidrug resistance. Analysis grouped 330 global bla(OXA-232)–carrying ST15 CRKP strains into 5 clades, indicating clonal transmission with small genetic distances among multiple strains. The lineage originated in the United States, then spread to Europe, Asia, Oceania, and Africa. Most recent common ancestor was traced back to 2000; mutations averaged ≈1.7 per year per genome. Our research helps identify key forces driving global spread of bla(OXA-232)–carrying CRKP ST15 lineage and emphasizes the importance of ongoing surveillance of epidemic CRKP. Centers for Disease Control and Prevention 2023-11 /pmc/articles/PMC10617323/ /pubmed/37877525 http://dx.doi.org/10.3201/eid2911.230463 Text en https://creativecommons.org/licenses/by/4.0/Emerging Infectious Diseases is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.
spellingShingle Research
Wu, Yuye
Jiang, Tian
He, Xianhong
Shao, Jiayu
Wu, Chenghao
Mao, Weifang
Jia, Huiqiong
He, Fang
Kong, Yingying
Wu, Jianyong
Sun, Qingyang
Sun, Long
Draz, Mohamed S.
Xie, Xinyou
Zhang, Jun
Ruan, Zhi
Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
title Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
title_full Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
title_fullStr Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
title_full_unstemmed Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
title_short Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla(OXA-232)–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
title_sort global phylogeography and genomic epidemiology of carbapenem-resistant bla(oxa-232)–carrying klebsiella pneumoniae sequence type 15 lineage
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10617323/
https://www.ncbi.nlm.nih.gov/pubmed/37877525
http://dx.doi.org/10.3201/eid2911.230463
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