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Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging

Distortion of echo planar imaging (EPI) can be corrected using B(0) field maps, which can be estimated with the topup algorithm that requires two EPI images with opposite distortions. In this study, we propose a new algorithm, termed topup algorithm by single K-space (TASK), to generate two input im...

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Autores principales: Hwang, Seon-Ha, Lee, Hyun-Soo, Choi, Seung Hong, Park, Sung-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618273/
https://www.ncbi.nlm.nih.gov/pubmed/37907782
http://dx.doi.org/10.1038/s41598-023-46163-3
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author Hwang, Seon-Ha
Lee, Hyun-Soo
Choi, Seung Hong
Park, Sung-Hong
author_facet Hwang, Seon-Ha
Lee, Hyun-Soo
Choi, Seung Hong
Park, Sung-Hong
author_sort Hwang, Seon-Ha
collection PubMed
description Distortion of echo planar imaging (EPI) can be corrected using B(0) field maps, which can be estimated with the topup algorithm that requires two EPI images with opposite distortions. In this study, we propose a new algorithm, termed topup algorithm by single K-space (TASK), to generate two input images from a single k-space for the topup algorithm to correct EPI distortions. The centric EPI contains the opposite phase-encoding polarities in one k-space, which can be divided into two halves with opposite distortions. Therefore, two inputs could be extracted by dividing the k-space into halves and processing them using the proposed procedure including an iterative procedure of automatic brain masking and uniformity correction. The efficiency of TASK was evaluated using 3D EPI. Quantitative evaluations showed that TASK corrected EPI distortion at a similar level to the traditional methods. The estimated field maps from the conventional topup and TASK showed a high correlation ([Formula: see text] ). An ablation study showed the validity of every suggested step. Furthermore, it was confirmed that TASK was effective for distortion correction of two-shot centric EPI as well, demonstrating its wider applicability. In conclusion, TASK can correct EPI distortions by its own single k-space information with no additional scan.
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spelling pubmed-106182732023-11-02 Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging Hwang, Seon-Ha Lee, Hyun-Soo Choi, Seung Hong Park, Sung-Hong Sci Rep Article Distortion of echo planar imaging (EPI) can be corrected using B(0) field maps, which can be estimated with the topup algorithm that requires two EPI images with opposite distortions. In this study, we propose a new algorithm, termed topup algorithm by single K-space (TASK), to generate two input images from a single k-space for the topup algorithm to correct EPI distortions. The centric EPI contains the opposite phase-encoding polarities in one k-space, which can be divided into two halves with opposite distortions. Therefore, two inputs could be extracted by dividing the k-space into halves and processing them using the proposed procedure including an iterative procedure of automatic brain masking and uniformity correction. The efficiency of TASK was evaluated using 3D EPI. Quantitative evaluations showed that TASK corrected EPI distortion at a similar level to the traditional methods. The estimated field maps from the conventional topup and TASK showed a high correlation ([Formula: see text] ). An ablation study showed the validity of every suggested step. Furthermore, it was confirmed that TASK was effective for distortion correction of two-shot centric EPI as well, demonstrating its wider applicability. In conclusion, TASK can correct EPI distortions by its own single k-space information with no additional scan. Nature Publishing Group UK 2023-10-31 /pmc/articles/PMC10618273/ /pubmed/37907782 http://dx.doi.org/10.1038/s41598-023-46163-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hwang, Seon-Ha
Lee, Hyun-Soo
Choi, Seung Hong
Park, Sung-Hong
Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging
title Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging
title_full Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging
title_fullStr Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging
title_full_unstemmed Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging
title_short Distortion correction using topup algorithm by single k-space (TASK) for echo planar imaging
title_sort distortion correction using topup algorithm by single k-space (task) for echo planar imaging
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618273/
https://www.ncbi.nlm.nih.gov/pubmed/37907782
http://dx.doi.org/10.1038/s41598-023-46163-3
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