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Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation

In the brain, many regions work in a network-like association, yet it is not known how durable these associations are in terms of activity and could survive without structural connections. To assess the association or similarity between brain regions with a generating approach, this study evaluated...

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Autores principales: Nakajima, Ryota, Shirakami, Arata, Tsumura, Hayato, Matsuda, Kouki, Nakamura, Eita, Shimono, Masanori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618281/
https://www.ncbi.nlm.nih.gov/pubmed/37907640
http://dx.doi.org/10.1038/s42003-023-05453-2
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author Nakajima, Ryota
Shirakami, Arata
Tsumura, Hayato
Matsuda, Kouki
Nakamura, Eita
Shimono, Masanori
author_facet Nakajima, Ryota
Shirakami, Arata
Tsumura, Hayato
Matsuda, Kouki
Nakamura, Eita
Shimono, Masanori
author_sort Nakajima, Ryota
collection PubMed
description In the brain, many regions work in a network-like association, yet it is not known how durable these associations are in terms of activity and could survive without structural connections. To assess the association or similarity between brain regions with a generating approach, this study evaluated the similarity of activities of neurons within each region after disconnecting between regions. The “generation” approach here refers to using a multi-layer LSTM (Long Short-Term Memory) model to learn the rules of activity generation in one region and then apply that knowledge to generate activity in other regions. Surprisingly, the results revealed that activity generation from one region to disconnected regions was possible with similar accuracy to generation between the same regions in many cases. Notably, firing rates and synchronization of firing between neuron pairs, often used as neuronal representations, could be reproduced with precision. Additionally, accuracies were associated with the relative angle between brain regions and the strength of the structural connections that initially connected them. This outcome enables us to look into trends governing non-uniformity of the cortex based on the potential to generate informative data and reduces the need for animal experiments.
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spelling pubmed-106182812023-11-02 Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation Nakajima, Ryota Shirakami, Arata Tsumura, Hayato Matsuda, Kouki Nakamura, Eita Shimono, Masanori Commun Biol Article In the brain, many regions work in a network-like association, yet it is not known how durable these associations are in terms of activity and could survive without structural connections. To assess the association or similarity between brain regions with a generating approach, this study evaluated the similarity of activities of neurons within each region after disconnecting between regions. The “generation” approach here refers to using a multi-layer LSTM (Long Short-Term Memory) model to learn the rules of activity generation in one region and then apply that knowledge to generate activity in other regions. Surprisingly, the results revealed that activity generation from one region to disconnected regions was possible with similar accuracy to generation between the same regions in many cases. Notably, firing rates and synchronization of firing between neuron pairs, often used as neuronal representations, could be reproduced with precision. Additionally, accuracies were associated with the relative angle between brain regions and the strength of the structural connections that initially connected them. This outcome enables us to look into trends governing non-uniformity of the cortex based on the potential to generate informative data and reduces the need for animal experiments. Nature Publishing Group UK 2023-10-31 /pmc/articles/PMC10618281/ /pubmed/37907640 http://dx.doi.org/10.1038/s42003-023-05453-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nakajima, Ryota
Shirakami, Arata
Tsumura, Hayato
Matsuda, Kouki
Nakamura, Eita
Shimono, Masanori
Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
title Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
title_full Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
title_fullStr Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
title_full_unstemmed Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
title_short Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
title_sort mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618281/
https://www.ncbi.nlm.nih.gov/pubmed/37907640
http://dx.doi.org/10.1038/s42003-023-05453-2
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