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Diversity of hydrodynamic radii of intrinsically disordered proteins

Intrinsically disordered proteins (IDPs) form an important class of biomolecules regulating biological processes in higher organisms. The lack of a fixed spatial structure facilitates them to perform their regulatory functions and allows the efficiency of biochemical reactions to be controlled by te...

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Autores principales: Białobrzewski, Michał K., Klepka, Barbara P., Michaś, Agnieszka, Cieplak-Rotowska, Maja K., Staszałek, Zuzanna, Niedźwiecka, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618399/
https://www.ncbi.nlm.nih.gov/pubmed/37831084
http://dx.doi.org/10.1007/s00249-023-01683-8
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author Białobrzewski, Michał K.
Klepka, Barbara P.
Michaś, Agnieszka
Cieplak-Rotowska, Maja K.
Staszałek, Zuzanna
Niedźwiecka, Anna
author_facet Białobrzewski, Michał K.
Klepka, Barbara P.
Michaś, Agnieszka
Cieplak-Rotowska, Maja K.
Staszałek, Zuzanna
Niedźwiecka, Anna
author_sort Białobrzewski, Michał K.
collection PubMed
description Intrinsically disordered proteins (IDPs) form an important class of biomolecules regulating biological processes in higher organisms. The lack of a fixed spatial structure facilitates them to perform their regulatory functions and allows the efficiency of biochemical reactions to be controlled by temperature and the cellular environment. From the biophysical point of view, IDPs are biopolymers with a broad configuration state space and their actual conformation depends on non-covalent interactions of its amino acid side chain groups at given temperature and chemical conditions. Thus, the hydrodynamic radius (R(h)) of an IDP of a given polymer length (N) is a sequence- and environment-dependent variable. We have reviewed the literature values of hydrodynamic radii of IDPs determined experimentally by SEC, AUC, PFG NMR, DLS, and FCS, and complement them with our FCS results obtained for a series of protein fragments involved in the regulation of human gene expression. The data collected herein show that the values of hydrodynamic radii of IDPs can span the full space between the folded globular and denatured proteins in the R(h)(N) diagram. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00249-023-01683-8.
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spelling pubmed-106183992023-11-02 Diversity of hydrodynamic radii of intrinsically disordered proteins Białobrzewski, Michał K. Klepka, Barbara P. Michaś, Agnieszka Cieplak-Rotowska, Maja K. Staszałek, Zuzanna Niedźwiecka, Anna Eur Biophys J Original Article Intrinsically disordered proteins (IDPs) form an important class of biomolecules regulating biological processes in higher organisms. The lack of a fixed spatial structure facilitates them to perform their regulatory functions and allows the efficiency of biochemical reactions to be controlled by temperature and the cellular environment. From the biophysical point of view, IDPs are biopolymers with a broad configuration state space and their actual conformation depends on non-covalent interactions of its amino acid side chain groups at given temperature and chemical conditions. Thus, the hydrodynamic radius (R(h)) of an IDP of a given polymer length (N) is a sequence- and environment-dependent variable. We have reviewed the literature values of hydrodynamic radii of IDPs determined experimentally by SEC, AUC, PFG NMR, DLS, and FCS, and complement them with our FCS results obtained for a series of protein fragments involved in the regulation of human gene expression. The data collected herein show that the values of hydrodynamic radii of IDPs can span the full space between the folded globular and denatured proteins in the R(h)(N) diagram. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00249-023-01683-8. Springer International Publishing 2023-10-13 2023 /pmc/articles/PMC10618399/ /pubmed/37831084 http://dx.doi.org/10.1007/s00249-023-01683-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Białobrzewski, Michał K.
Klepka, Barbara P.
Michaś, Agnieszka
Cieplak-Rotowska, Maja K.
Staszałek, Zuzanna
Niedźwiecka, Anna
Diversity of hydrodynamic radii of intrinsically disordered proteins
title Diversity of hydrodynamic radii of intrinsically disordered proteins
title_full Diversity of hydrodynamic radii of intrinsically disordered proteins
title_fullStr Diversity of hydrodynamic radii of intrinsically disordered proteins
title_full_unstemmed Diversity of hydrodynamic radii of intrinsically disordered proteins
title_short Diversity of hydrodynamic radii of intrinsically disordered proteins
title_sort diversity of hydrodynamic radii of intrinsically disordered proteins
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618399/
https://www.ncbi.nlm.nih.gov/pubmed/37831084
http://dx.doi.org/10.1007/s00249-023-01683-8
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