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Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma
Lung cancer is one of the most common malignant solid tumors and the leading cause of cancer-associated mortality worldwide. Endocytosis is an essential physiological activity for cells to maintain membrane homeostasis, and has been reported to serve an important role in tumorigenesis and progressio...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618919/ https://www.ncbi.nlm.nih.gov/pubmed/37920434 http://dx.doi.org/10.3892/ol.2023.14098 |
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author | Zhang, Yixin Liang, Siwen Zhang, Yan Liu, Minghui Zhang, Kai |
author_facet | Zhang, Yixin Liang, Siwen Zhang, Yan Liu, Minghui Zhang, Kai |
author_sort | Zhang, Yixin |
collection | PubMed |
description | Lung cancer is one of the most common malignant solid tumors and the leading cause of cancer-associated mortality worldwide. Endocytosis is an essential physiological activity for cells to maintain membrane homeostasis, and has been reported to serve an important role in tumorigenesis and progression. In the present study, the aim was to construct a prognostic prediction model of endocytosis-associated genes for patients with lung adenocarcinoma (LUAD). The endocytosis-associated gene signature was established using Lasso Cox regression analysis using the training set of the LUAD cohort from The Cancer Genome Atlas (TCGA) database, and verified using two datasets from the Gene Expression Omnibus (GEO) database. Kaplan-Meier survival curves were used to evaluate the effectiveness of the prognostic evaluation of patients with LUAD. Differentially expressed genes were screened in the tumor tissue of patients compared with paired paracancerous tissues. A series of candidate genes associated to the prognosis of patients with LUAD was obtained using univariate Cox's regression analysis. Using the Lasso Cox regression analysis, an appropriate risk model with 18 endocytosis-associated genes was established. A high-risk score was positively correlated with a higher tumor stage and pathologic grade. Patients with LUAD and high-risk scores had shorter survival times, increased intratumor heterogeneities and immune cell infiltration into tumor tissues, compared with those patients with LUAD and low-risk scores. The endocytosis inhibitor chloroquine could repress proliferation and increase the apoptosis of lung cancer cells. In summary, a novel endocytosis-associated gene signature was constructed using TCGA and GEO datasets. Patients with LUAD and high-risk scores, as calculated by the signature, had a poor prognosis and short survival time. |
format | Online Article Text |
id | pubmed-10618919 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-106189192023-11-02 Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma Zhang, Yixin Liang, Siwen Zhang, Yan Liu, Minghui Zhang, Kai Oncol Lett Articles Lung cancer is one of the most common malignant solid tumors and the leading cause of cancer-associated mortality worldwide. Endocytosis is an essential physiological activity for cells to maintain membrane homeostasis, and has been reported to serve an important role in tumorigenesis and progression. In the present study, the aim was to construct a prognostic prediction model of endocytosis-associated genes for patients with lung adenocarcinoma (LUAD). The endocytosis-associated gene signature was established using Lasso Cox regression analysis using the training set of the LUAD cohort from The Cancer Genome Atlas (TCGA) database, and verified using two datasets from the Gene Expression Omnibus (GEO) database. Kaplan-Meier survival curves were used to evaluate the effectiveness of the prognostic evaluation of patients with LUAD. Differentially expressed genes were screened in the tumor tissue of patients compared with paired paracancerous tissues. A series of candidate genes associated to the prognosis of patients with LUAD was obtained using univariate Cox's regression analysis. Using the Lasso Cox regression analysis, an appropriate risk model with 18 endocytosis-associated genes was established. A high-risk score was positively correlated with a higher tumor stage and pathologic grade. Patients with LUAD and high-risk scores had shorter survival times, increased intratumor heterogeneities and immune cell infiltration into tumor tissues, compared with those patients with LUAD and low-risk scores. The endocytosis inhibitor chloroquine could repress proliferation and increase the apoptosis of lung cancer cells. In summary, a novel endocytosis-associated gene signature was constructed using TCGA and GEO datasets. Patients with LUAD and high-risk scores, as calculated by the signature, had a poor prognosis and short survival time. D.A. Spandidos 2023-10-12 /pmc/articles/PMC10618919/ /pubmed/37920434 http://dx.doi.org/10.3892/ol.2023.14098 Text en Copyright: © Zhang et al. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Zhang, Yixin Liang, Siwen Zhang, Yan Liu, Minghui Zhang, Kai Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
title | Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
title_full | Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
title_fullStr | Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
title_full_unstemmed | Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
title_short | Identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
title_sort | identification of a novel endocytosis‑associated gene signature for prognostic prediction in lung adenocarcinoma |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618919/ https://www.ncbi.nlm.nih.gov/pubmed/37920434 http://dx.doi.org/10.3892/ol.2023.14098 |
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