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Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum

Corynebacterium glutamicum (C. glutamicum) has been considered a very important and meaningful industrial microorganism for the production of amino acids worldwide. To produce amino acids, cells require nicotinamide adenine dinucleotide phosphate (NADPH), which is a biological reducing agent. The pe...

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Autores principales: Yu, Hyeonjeong, Hong, Jiyeon, Seok, Jihye, Seu, Young-Bae, Kim, Il-Kwon, Kim, Kyung-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society for Microbiology and Biotechnology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10619557/
https://www.ncbi.nlm.nih.gov/pubmed/37417004
http://dx.doi.org/10.4014/jmb.2305.05002
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author Yu, Hyeonjeong
Hong, Jiyeon
Seok, Jihye
Seu, Young-Bae
Kim, Il-Kwon
Kim, Kyung-Jin
author_facet Yu, Hyeonjeong
Hong, Jiyeon
Seok, Jihye
Seu, Young-Bae
Kim, Il-Kwon
Kim, Kyung-Jin
author_sort Yu, Hyeonjeong
collection PubMed
description Corynebacterium glutamicum (C. glutamicum) has been considered a very important and meaningful industrial microorganism for the production of amino acids worldwide. To produce amino acids, cells require nicotinamide adenine dinucleotide phosphate (NADPH), which is a biological reducing agent. The pentose phosphate pathway (PPP) can supply NADPH in cells via the 6-phosphogluconate dehydrogenase (6PGD) enzyme, which is an oxidoreductase that converts 6-phosphogluconate (6PG) to ribulose 5-phosphate (Ru5P), to produce NADPH. In this study, we identified the crystal structure of 6PGD_apo and 6PGD_NADP from C. glutamicum ATCC 13032 (Cg6PGD) and reported our biological research based on this structure. We identified the substrate binding site and co-factor binding site of Cg6PGD, which are crucial for understanding this enzyme. Based on the findings of our research, Cg6PGD is expected to be used as a NADPH resource in the food industry and as a drug target in the pharmaceutical industry.
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spelling pubmed-106195572023-11-02 Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum Yu, Hyeonjeong Hong, Jiyeon Seok, Jihye Seu, Young-Bae Kim, Il-Kwon Kim, Kyung-Jin J Microbiol Biotechnol Research article Corynebacterium glutamicum (C. glutamicum) has been considered a very important and meaningful industrial microorganism for the production of amino acids worldwide. To produce amino acids, cells require nicotinamide adenine dinucleotide phosphate (NADPH), which is a biological reducing agent. The pentose phosphate pathway (PPP) can supply NADPH in cells via the 6-phosphogluconate dehydrogenase (6PGD) enzyme, which is an oxidoreductase that converts 6-phosphogluconate (6PG) to ribulose 5-phosphate (Ru5P), to produce NADPH. In this study, we identified the crystal structure of 6PGD_apo and 6PGD_NADP from C. glutamicum ATCC 13032 (Cg6PGD) and reported our biological research based on this structure. We identified the substrate binding site and co-factor binding site of Cg6PGD, which are crucial for understanding this enzyme. Based on the findings of our research, Cg6PGD is expected to be used as a NADPH resource in the food industry and as a drug target in the pharmaceutical industry. The Korean Society for Microbiology and Biotechnology 2023-10-28 2023-06-27 /pmc/articles/PMC10619557/ /pubmed/37417004 http://dx.doi.org/10.4014/jmb.2305.05002 Text en Copyright © 2023 by the authors. Licensee KMB https://creativecommons.org/licenses/by/4.0/This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/)
spellingShingle Research article
Yu, Hyeonjeong
Hong, Jiyeon
Seok, Jihye
Seu, Young-Bae
Kim, Il-Kwon
Kim, Kyung-Jin
Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum
title Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum
title_full Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum
title_fullStr Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum
title_full_unstemmed Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum
title_short Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum
title_sort crystal structures of 6-phosphogluconate dehydrogenase from corynebacterium glutamicum
topic Research article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10619557/
https://www.ncbi.nlm.nih.gov/pubmed/37417004
http://dx.doi.org/10.4014/jmb.2305.05002
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