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Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection
Many early warning algorithms are downstream of clinical evaluation and diagnostic testing, which means that they may not be useful when clinicians fail to suspect illness and fail to order appropriate tests. Depending on how such algorithms handle missing data, they could even indicate “low risk” s...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10619833/ https://www.ncbi.nlm.nih.gov/pubmed/37910497 http://dx.doi.org/10.1371/journal.pdig.0000365 |
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author | Prasad, Varesh Aydemir, Baturay Kehoe, Iain E. Kotturesh, Chaya O’Connell, Abigail Biebelberg, Brett Wang, Yang Lynch, James C. Pepino, Jeremy A. Filbin, Michael R. Heldt, Thomas Reisner, Andrew T. |
author_facet | Prasad, Varesh Aydemir, Baturay Kehoe, Iain E. Kotturesh, Chaya O’Connell, Abigail Biebelberg, Brett Wang, Yang Lynch, James C. Pepino, Jeremy A. Filbin, Michael R. Heldt, Thomas Reisner, Andrew T. |
author_sort | Prasad, Varesh |
collection | PubMed |
description | Many early warning algorithms are downstream of clinical evaluation and diagnostic testing, which means that they may not be useful when clinicians fail to suspect illness and fail to order appropriate tests. Depending on how such algorithms handle missing data, they could even indicate “low risk” simply because the testing data were never ordered. We considered predictive methodologies to identify sepsis at triage, before diagnostic tests are ordered, in a busy Emergency Department (ED). One algorithm used “bland clinical data” (data available at triage for nearly every patient). The second algorithm added three yes/no questions to be answered after the triage interview. Retrospectively, we studied adult patients from a single ED between 2014–16, separated into training (70%) and testing (30%) cohorts, and a final validation cohort of patients from four EDs between 2016–2018. Sepsis was defined per the Rhee criteria. Investigational predictors were demographics and triage vital signs (downloaded from the hospital EMR); past medical history; and the auxiliary queries (answered by chart reviewers who were blinded to all data except the triage note and initial HPI). We developed L2-regularized logistic regression models using a greedy forward feature selection. There were 1164, 499, and 784 patients in the training, testing, and validation cohorts, respectively. The bland clinical data model yielded ROC AUC’s 0.78 (0.76–0.81) and 0.77 (0.73–0.81), for training and testing, respectively, and ranged from 0.74–0.79 in four hospital validation. The second model which included auxiliary queries yielded 0.84 (0.82–0.87) and 0.83 (0.79–0.86), and ranged from 0.78–0.83 in four hospital validation. The first algorithm did not require clinician input but yielded middling performance. The second showed a trend towards superior performance, though required additional user effort. These methods are alternatives to predictive algorithms downstream of clinical evaluation and diagnostic testing. For hospital early warning algorithms, consideration should be given to bias and usability of various methods. |
format | Online Article Text |
id | pubmed-10619833 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-106198332023-11-02 Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection Prasad, Varesh Aydemir, Baturay Kehoe, Iain E. Kotturesh, Chaya O’Connell, Abigail Biebelberg, Brett Wang, Yang Lynch, James C. Pepino, Jeremy A. Filbin, Michael R. Heldt, Thomas Reisner, Andrew T. PLOS Digit Health Research Article Many early warning algorithms are downstream of clinical evaluation and diagnostic testing, which means that they may not be useful when clinicians fail to suspect illness and fail to order appropriate tests. Depending on how such algorithms handle missing data, they could even indicate “low risk” simply because the testing data were never ordered. We considered predictive methodologies to identify sepsis at triage, before diagnostic tests are ordered, in a busy Emergency Department (ED). One algorithm used “bland clinical data” (data available at triage for nearly every patient). The second algorithm added three yes/no questions to be answered after the triage interview. Retrospectively, we studied adult patients from a single ED between 2014–16, separated into training (70%) and testing (30%) cohorts, and a final validation cohort of patients from four EDs between 2016–2018. Sepsis was defined per the Rhee criteria. Investigational predictors were demographics and triage vital signs (downloaded from the hospital EMR); past medical history; and the auxiliary queries (answered by chart reviewers who were blinded to all data except the triage note and initial HPI). We developed L2-regularized logistic regression models using a greedy forward feature selection. There were 1164, 499, and 784 patients in the training, testing, and validation cohorts, respectively. The bland clinical data model yielded ROC AUC’s 0.78 (0.76–0.81) and 0.77 (0.73–0.81), for training and testing, respectively, and ranged from 0.74–0.79 in four hospital validation. The second model which included auxiliary queries yielded 0.84 (0.82–0.87) and 0.83 (0.79–0.86), and ranged from 0.78–0.83 in four hospital validation. The first algorithm did not require clinician input but yielded middling performance. The second showed a trend towards superior performance, though required additional user effort. These methods are alternatives to predictive algorithms downstream of clinical evaluation and diagnostic testing. For hospital early warning algorithms, consideration should be given to bias and usability of various methods. Public Library of Science 2023-11-01 /pmc/articles/PMC10619833/ /pubmed/37910497 http://dx.doi.org/10.1371/journal.pdig.0000365 Text en © 2023 Prasad et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Prasad, Varesh Aydemir, Baturay Kehoe, Iain E. Kotturesh, Chaya O’Connell, Abigail Biebelberg, Brett Wang, Yang Lynch, James C. Pepino, Jeremy A. Filbin, Michael R. Heldt, Thomas Reisner, Andrew T. Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection |
title | Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection |
title_full | Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection |
title_fullStr | Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection |
title_full_unstemmed | Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection |
title_short | Diagnostic suspicion bias and machine learning: Breaking the awareness deadlock for sepsis detection |
title_sort | diagnostic suspicion bias and machine learning: breaking the awareness deadlock for sepsis detection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10619833/ https://www.ncbi.nlm.nih.gov/pubmed/37910497 http://dx.doi.org/10.1371/journal.pdig.0000365 |
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