Cargando…

Predicting active enhancers with DNA methylation and histone modification

BACKGROUND: Enhancers play a crucial role in gene regulation, and some active enhancers produce noncoding RNAs known as enhancer RNAs (eRNAs) bi-directionally. The most commonly used method for detecting eRNAs is CAGE-seq, but the instability of eRNAs in vivo leads to data noise in sequencing result...

Descripción completa

Detalles Bibliográficos
Autores principales:	Luo, Ximei, Li, Qun, Tang, Yifan, Liu, Yan, Zou, Quan, Zheng, Jie, Zhang, Ying, Xu, Lei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10621108/ https://www.ncbi.nlm.nih.gov/pubmed/37919681 http://dx.doi.org/10.1186/s12859-023-05547-y

Ejemplares similares

Recall DNA methylation levels at low coverage sites using a CNN model in WGBS
por: Luo, Ximei, et al.
Publicado: (2023)

DNA Methylation and Histone Modification in Hypertension
por: Stoll, Shaunrick, et al.
Publicado: (2018)

Simultaneous profiling of histone modifications and DNA methylation via nanopore sequencing
por: Yue, Xue, et al.
Publicado: (2022)

Oxidative stress alters global histone modification and DNA methylation
por: Niu, Yingmei, et al.
Publicado: (2015)

DNA methylation affects nuclear organization, histone modifications, and linker histone binding but not chromatin compaction
por: Gilbert, Nick, et al.
Publicado: (2007)

Epigenetic modification of histone 3 at lysine 9 in sheep zygotes and its relationship with DNA methylation
por: Hou, Jian, et al.
Publicado: (2008)

Patterning and Regulatory Associations of DNA Methylation Are Mirrored by Histone Modifications in Insects
por: Hunt, Brendan G., et al.
Publicado: (2013)

The Relevance of DNA Methylation and Histone Modification in Periodontitis: A Scoping Review
por: Liaw, Andrew, et al.
Publicado: (2022)

Histone Lysine Methylation Modification and Its Role in Vascular Calcification
por: Cao, Ye-Chi, et al.
Publicado: (2022)

Comprehensive analysis of histone methylation modification regulators for predicting prognosis and drug sensitivity in lung adenocarcinoma
por: Ye, Ying, et al.
Publicado: (2022)

Effects of Wutou Decoction on DNA Methylation and Histone Modifications in Rats with Collagen-Induced Arthritis
por: Liu, Ya-Fei, et al.
Publicado: (2016)

Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing
por: Wu, Jiejun, et al.
Publicado: (2007)

The multi-domain protein Np95 connects DNA methylation and histone modification
por: Rottach, Andrea, et al.
Publicado: (2010)

Epigenetic Cross-Talk between DNA Methylation and Histone Modifications in Human Cancers
por: Kondo, Yutaka
Publicado: (2009)

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse
por: Morselli, Marco, et al.
Publicado: (2015)

Dynamic changes in histone modifications precede de novo DNA methylation in oocytes
por: Stewart, Kathleen R., et al.
Publicado: (2015)

The Role of DNA Methylation and Histone Modifications in Neurodegenerative Diseases: A Systematic Review
por: Wen, Ke-xin, et al.
Publicado: (2016)

The Role of DNA Methylation and Histone Modification in Periodontal Disease: A Systematic Review
por: Khouly, Ismael, et al.
Publicado: (2020)

The Epigenetics of Anxiety Pathophysiology: A DNA Methylation and Histone Modification Focused Review
por: Persaud, Nikita S., et al.
Publicado: (2023)

Molecular Processes Connecting DNA Methylation Patterns with DNA Methyltransferases and Histone Modifications in Mammalian Genomes
por: Jeltsch, Albert, et al.
Publicado: (2018)

Molecular Processes Connecting DNA Methylation Patterns with DNA Methyltransferases and Histone Modifications in Mammalian Genomes
por: Jeltsch, Albert, et al.
Publicado: (2019)

Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures
por: Wang, Lu, et al.
Publicado: (2018)

Loss of mdig expression enhances DNA and histone methylation and metastasis of aggressive breast cancer
por: Thakur, Chitra, et al.
Publicado: (2018)

DNA methylation-histone modification relationships across the desmin locus in human primary cells
por: Allen, Marianne Lindahl, et al.
Publicado: (2009)

DNA Methylation and Histone Modifications Are the Molecular Lock in Lentivirally Transduced Hematopoietic Progenitor Cells
por: Ngai, Siew Ching, et al.
Publicado: (2015)

The Role of Sulforaphane in Epigenetic Mechanisms, Including Interdependence between Histone Modification and DNA Methylation
por: Kaufman-Szymczyk, Agnieszka, et al.
Publicado: (2015)

Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse
por: Morselli, Marco, et al.
Publicado: (2017)

DNA methylation and histone post-translational modification stability in post-mortem brain tissue
por: Jarmasz, Jessica S., et al.
Publicado: (2019)

Epigenetic Interactions between Alcohol and Cannabinergic Effects: Focus on Histone Modification and DNA Methylation
por: Parira, Tiyash, et al.
Publicado: (2017)

Gut Microbiota as Important Mediator Between Diet and DNA Methylation and Histone Modifications in the Host
por: D’Aquila, Patrizia, et al.
Publicado: (2020)

Identification of methylation states of DNA regions for Illumina methylation BeadChip
por: Luo, Ximei, et al.
Publicado: (2020)

DNA Methylation and Histone Modifications Regulate De Novo Shoot Regeneration in Arabidopsis by Modulating WUSCHEL Expression and Auxin Signaling
por: Li, Wei, et al.
Publicado: (2011)

The Dynamic Changes of DNA Methylation and Histone Modifications of Salt Responsive Transcription Factor Genes in Soybean
por: Song, Yuguang, et al.
Publicado: (2012)

DNA methylation and histone modifications regulate SOX11 expression in lymphoid and solid cancer cells
por: Nordström, Lena, et al.
Publicado: (2015)

Specific Modifications of Histone Tails, but Not DNA Methylation, Mirror the Temporal Variation of Mammalian Recombination Hotspots
por: Zeng, Jia, et al.
Publicado: (2014)

DNA Methylation and Histone Modification in Low-Grade Gliomas: Current Understanding and Potential Clinical Targets
por: Ozair, Ahmad, et al.
Publicado: (2023)

Histone modifications and DNA methylation act cooperatively in regulating symbiosis genes in the sea anemone Aiptasia
por: Nawaz, Kashif, et al.
Publicado: (2022)

Harnessing Epigenetics for Breast Cancer Therapy: The Role of DNA Methylation, Histone Modifications, and MicroRNA
por: Szczepanek, Joanna, et al.
Publicado: (2023)

DNA methylation and histone post-translational modifications in atherosclerosis and a novel perspective for epigenetic therapy
por: Zhang, Liang, et al.
Publicado: (2023)

Crosstalk between histone modification and DNA methylation orchestrates the epigenetic regulation of the costimulatory factors, Tim-3 and galectin-9, in cervical cancer
por: Zhang, Li, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_8q3jt8v9g00o3crohoa8ln34oc