Cargando…

Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph

BACKGROUND: Open Science Graphs (OSGs) are scientific knowledge graphs representing different entities of the research lifecycle (e.g. projects, people, research outcomes, institutions) and the relationships among them. They present a contextualized view of current research that supports discovery,...

Descripción completa

Detalles Bibliográficos
Autores principales: Papadopoulou, Elli, Bardi, Alessia, Kakaletris, George, Tziotzios, Diamadis, Manghi, Paolo, Manola, Natalia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10621150/
https://www.ncbi.nlm.nih.gov/pubmed/37919767
http://dx.doi.org/10.1186/s13326-023-00297-5
_version_ 1785130353931845632
author Papadopoulou, Elli
Bardi, Alessia
Kakaletris, George
Tziotzios, Diamadis
Manghi, Paolo
Manola, Natalia
author_facet Papadopoulou, Elli
Bardi, Alessia
Kakaletris, George
Tziotzios, Diamadis
Manghi, Paolo
Manola, Natalia
author_sort Papadopoulou, Elli
collection PubMed
description BACKGROUND: Open Science Graphs (OSGs) are scientific knowledge graphs representing different entities of the research lifecycle (e.g. projects, people, research outcomes, institutions) and the relationships among them. They present a contextualized view of current research that supports discovery, re-use, reproducibility, monitoring, transparency and omni-comprehensive assessment. A Data Management Plan (DMP) contains information concerning both the research processes and the data collected, generated and/or re-used during a project’s lifetime. Automated solutions and workflows that connect DMPs with the actual data and other contextual information (e.g., publications, fundings) are missing from the landscape. DMPs being submitted as deliverables also limit their findability. In an open and FAIR-enabling research ecosystem information linking between research processes and research outputs is essential. ARGOS tool for FAIR data management contributes to the OpenAIRE Research Graph (RG) and utilises its underlying services and trusted sources to progressively automate validation and automations of Research Data Management (RDM) practices. RESULTS: A comparative analysis was conducted between the data models of ARGOS and OpenAIRE Research Graph against the DMP Common Standard. Following this, we extended ARGOS with export format converters and semantic tagging, and the OpenAIRE RG with a DMP entity and semantics between existing entities and relationships. This enabled the integration of ARGOS machine actionable DMPs (ma-DMPs) to the OpenAIRE OSG, enriching and exposing DMPs as FAIR outputs. CONCLUSIONS: This paper, to our knowledge, is the first to introduce exposing ma-DMPs in OSGs and making the link between OSGs and DMPs, introducing the latter as entities in the research lifecycle. Further, it provides insight to ARGOS DMP service interoperability practices and integrations to populate the OpenAIRE Research Graph with DMP entities and relationships and strengthen both FAIRness of outputs as well as information exchange in a standard way.
format Online
Article
Text
id pubmed-10621150
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-106211502023-11-03 Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph Papadopoulou, Elli Bardi, Alessia Kakaletris, George Tziotzios, Diamadis Manghi, Paolo Manola, Natalia J Biomed Semantics Database BACKGROUND: Open Science Graphs (OSGs) are scientific knowledge graphs representing different entities of the research lifecycle (e.g. projects, people, research outcomes, institutions) and the relationships among them. They present a contextualized view of current research that supports discovery, re-use, reproducibility, monitoring, transparency and omni-comprehensive assessment. A Data Management Plan (DMP) contains information concerning both the research processes and the data collected, generated and/or re-used during a project’s lifetime. Automated solutions and workflows that connect DMPs with the actual data and other contextual information (e.g., publications, fundings) are missing from the landscape. DMPs being submitted as deliverables also limit their findability. In an open and FAIR-enabling research ecosystem information linking between research processes and research outputs is essential. ARGOS tool for FAIR data management contributes to the OpenAIRE Research Graph (RG) and utilises its underlying services and trusted sources to progressively automate validation and automations of Research Data Management (RDM) practices. RESULTS: A comparative analysis was conducted between the data models of ARGOS and OpenAIRE Research Graph against the DMP Common Standard. Following this, we extended ARGOS with export format converters and semantic tagging, and the OpenAIRE RG with a DMP entity and semantics between existing entities and relationships. This enabled the integration of ARGOS machine actionable DMPs (ma-DMPs) to the OpenAIRE OSG, enriching and exposing DMPs as FAIR outputs. CONCLUSIONS: This paper, to our knowledge, is the first to introduce exposing ma-DMPs in OSGs and making the link between OSGs and DMPs, introducing the latter as entities in the research lifecycle. Further, it provides insight to ARGOS DMP service interoperability practices and integrations to populate the OpenAIRE Research Graph with DMP entities and relationships and strengthen both FAIRness of outputs as well as information exchange in a standard way. BioMed Central 2023-11-02 /pmc/articles/PMC10621150/ /pubmed/37919767 http://dx.doi.org/10.1186/s13326-023-00297-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Database
Papadopoulou, Elli
Bardi, Alessia
Kakaletris, George
Tziotzios, Diamadis
Manghi, Paolo
Manola, Natalia
Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph
title Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph
title_full Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph
title_fullStr Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph
title_full_unstemmed Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph
title_short Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph
title_sort data management plans as linked open data: exploiting argos fair and machine actionable outputs in the openaire research graph
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10621150/
https://www.ncbi.nlm.nih.gov/pubmed/37919767
http://dx.doi.org/10.1186/s13326-023-00297-5
work_keys_str_mv AT papadopoulouelli datamanagementplansaslinkedopendataexploitingargosfairandmachineactionableoutputsintheopenaireresearchgraph
AT bardialessia datamanagementplansaslinkedopendataexploitingargosfairandmachineactionableoutputsintheopenaireresearchgraph
AT kakaletrisgeorge datamanagementplansaslinkedopendataexploitingargosfairandmachineactionableoutputsintheopenaireresearchgraph
AT tziotziosdiamadis datamanagementplansaslinkedopendataexploitingargosfairandmachineactionableoutputsintheopenaireresearchgraph
AT manghipaolo datamanagementplansaslinkedopendataexploitingargosfairandmachineactionableoutputsintheopenaireresearchgraph
AT manolanatalia datamanagementplansaslinkedopendataexploitingargosfairandmachineactionableoutputsintheopenaireresearchgraph