Cargando…

Computational Methods for Single-Cell Proteomics

Advances in single-cell proteomics technologies have resulted in high-dimensional datasets comprising millions of cells that are capable of answering key questions about biology and disease. The advent of these technologies has prompted the development of computational tools to process and visualize...

Descripción completa

Detalles Bibliográficos
Autores principales:	Guldberg, Sophia M., Okholm, Trine Line Hauge, McCarthy, Elizabeth E., Spitzer, Matthew H.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10621466/ https://www.ncbi.nlm.nih.gov/pubmed/37040735 http://dx.doi.org/10.1146/annurev-biodatasci-020422-050255

Ejemplares similares

Circular RNAs are abundantly expressed and upregulated during human epidermal stem cell differentiation
por: Kristensen, Lasse Sommer, et al.
Publicado: (2017)

A conserved immune trajectory of recovery in hospitalized COVID-19 patients
por: Burnett, Cassandra E., et al.
Publicado: (2022)

Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients
por: Burnett, Cassandra E., et al.
Publicado: (2022)

Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer
por: Okholm, Trine Line Hauge, et al.
Publicado: (2017)

High-throughput RNA sequencing from paired lesional- and non-lesional skin reveals major alterations in the psoriasis circRNAome
por: Moldovan, Liviu-Ionut, et al.
Publicado: (2019)

Sex chromosome aneuploidies give rise to changes in the circular RNA profile: A circular transcriptome-wide study of Turner and Klinefelter syndrome across different tissues
por: Johannsen, Emma B., et al.
Publicado: (2022)

Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer
por: Rasmussen, Asta M, et al.
Publicado: (2023)

Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis
por: Taber, Ann, et al.
Publicado: (2020)

Author Correction: Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis
por: Taber, Ann, et al.
Publicado: (2022)

The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer
por: Hansen, Emma Bollmann, et al.
Publicado: (2022)

Foundations of Computational Finance with MATLAB
por: McCarthy, Ed
Publicado: (2018)

A proteomic profile of the healthy human placenta
por: Manna, Samprikta, et al.
Publicado: (2023)

circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
por: Okholm, Trine Line Hauge, et al.
Publicado: (2023)

Delineation of proteome changes driven by cell size and growth rate
por: Zatulovskiy, Evgeny, et al.
Publicado: (2022)

Using Methods From Computational Decision-making to Predict Nonadherence to Fitness Goals: Protocol for an Observational Study
por: McCarthy, Marie, et al.
Publicado: (2021)

Sample Preparation Methods for Targeted Single-Cell Proteomics
por: Eshghi, Azad, et al.
Publicado: (2023)

Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
por: Okholm, Trine Line Hauge, et al.
Publicado: (2020)

Water Droplet-in-Oil Digestion Method for Single-Cell Proteomics
por: Masuda, Takeshi, et al.
Publicado: (2022)

The computer incident response planning handbook: executable plans for protecting information at risk
por: McCarthy, N K
Publicado: (2012)

Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus
por: Waldron, Rose, et al.
Publicado: (2019)

Non-Traumatic Subdural Hematoma and Cancer: A Cohort Study
por: Okholm, Søren Hauge, et al.
Publicado: (2023)

Production of a Single Top Quark or Top Quark Pairs  in Association with $W/Z/\gamma$
por: McCarthy, Tom
Publicado: (2019)

Production of a Single Top Quark or of Top Quark Pairs in Association with $W/Z/\gamma$
por: McCarthy, Tom
Publicado: (2019)

Implications of observing and writing field notes through different lenses
por: Hellesø, Ragnhild, et al.
Publicado: (2015)

Self-efficacy and confidence of medical students with prior scribing experience: A mixed methods study
por: McCarthy, Elizabeth M., et al.
Publicado: (2022)

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference
por: Huang, Yuanhua, et al.
Publicado: (2019)

Automated Mapping of Phenotype Space with Single-Cell Data
por: Samusik, Nikolay, et al.
Publicado: (2016)

Proteomic insight into human directed selection of the domesticated chicken Gallus gallus.
por: Schmidt, Carl J., et al.
Publicado: (2023)

SSNIP-seq: A simple and rapid method for isolation of single-sperm nucleic acid for high-throughput sequencing
por: Novakovic, Stevan, et al.
Publicado: (2022)

A Method for Checking Genomic Integrity in Cultured Cell Lines from SNP Genotyping Data
por: Danecek, Petr, et al.
Publicado: (2016)

Computational Methods for Single-cell DNA Methylome Analysis
por: Iqbal, Waleed, et al.
Publicado: (2023)

Computational methods for the integrative analysis of single-cell data
por: Forcato, Mattia, et al.
Publicado: (2020)

Cell Therapy for Cardiovascular Disease: A Comparison of Methods of Delivery
por: Dib, Nabil, et al.
Publicado: (2010)

Unexpected finding of T-cell lymphoma in a previously healthy 16-year-old patient after a thorax trauma: a case report
por: Bach Okholm-Hansen, Anna, et al.
Publicado: (2014)

splatPop: simulating population scale single-cell RNA sequencing data
por: Azodi, Christina B., et al.
Publicado: (2021)

Introduction to Computational Proteomics
por: Colinge, Jacques, et al.
Publicado: (2007)

Optimizing expression quantitative trait locus mapping workflows for single-cell studies
por: Cuomo, Anna S. E., et al.
Publicado: (2021)

Measurements of the production of single top quarks or of top quark pairs in association with a W boson, a Z boson, or a photon with ATLAS & CMS
por: McCarthy, Thomas G.
Publicado: (2020)

Computational Models on Pathological Redox Signalling Driven by Pregnancy: A Review
por: Manna, Samprikta, et al.
Publicado: (2022)

Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data
por: McCalla, Sunnie Grace, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_gkbk1gqhdf61o184ksbd0ncpe9