Cargando…

Finding haplotypic signatures in proteins

BACKGROUND: The nonrandom distribution of alleles of common genomic variants produces haplotypes, which are fundamental in medical and population genetic studies. Consequently, protein-coding genes with different co-occurring sets of alleles can encode different amino acid sequences: protein haploty...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vašíček, Jakub, Skiadopoulou, Dafni, Kuznetsova, Ksenia G, Wen, Bo, Johansson, Stefan, Njølstad, Pål R, Bruckner, Stefan, Käll, Lukas, Vaudel, Marc
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2023
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622322/ https://www.ncbi.nlm.nih.gov/pubmed/37919975 http://dx.doi.org/10.1093/gigascience/giad093

Ejemplares similares

Retention Time and Fragmentation Predictors Increase Confidence in Identification of Common Variant Peptides
por: Skiadopoulou, Dafni, et al.
Publicado: (2023)

Extending protein interaction networks using proteoforms and small molecules
por: Hernández Sánchez, Luis Francisco, et al.
Publicado: (2023)

Smoking during pregnancy and its effect on placental weight: A Mendelian randomization study
por: Jaitner, Annika, et al.
Publicado: (2023)

Population prevalence and inheritance pattern of recurrent CNVs associated with neurodevelopmental disorders in 12,252 newborns and their parents
por: Smajlagić, Dinka, et al.
Publicado: (2020)

PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping
por: Sánchez, Luis Francisco Hernández, et al.
Publicado: (2019)

SeeCiTe: a method to assess CNV calls from SNP arrays using trio data
por: Lavrichenko, Ksenia, et al.
Publicado: (2021)

Autozygosity mapping and time-to-spontaneous delivery in Norwegian parent-offspring trios
por: Sole-Navais, Pol, et al.
Publicado: (2020)

Spatial Environment Affects HNF4A Mutation-Specific Proteome Signatures and Cellular Morphology in hiPSC-Derived β-Like Cells
por: Carrasco, Manuel, et al.
Publicado: (2022)

Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth
por: Helgeland, Øyvind, et al.
Publicado: (2019)

Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences
por: Zhang, Bo, et al.
Publicado: (2017)

Evolutionary Signatures of Common Human Cis-Regulatory Haplotypes
por: Ouyang, Ching, et al.
Publicado: (2008)

How to talk about protein‐level false discovery rates in shotgun proteomics
por: The, Matthew, et al.
Publicado: (2016)

Triqler for Protein Summarization of Data from Data-Independent Acquisition Mass Spectrometry
por: Truong, Patrick, et al.
Publicado: (2023)

Experimental Generation of SNP Haplotype Signatures in Patients with Sickle Cell Anaemia
por: Menzel, Stephan, et al.
Publicado: (2010)

Finding all maximal perfect haplotype blocks in linear time
por: Alanko, Jarno, et al.
Publicado: (2020)

HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering
por: Lin, Yen-Jen, et al.
Publicado: (2014)

Reprogrammed Cells Display Distinct Proteomic Signatures Associated with Colony Morphology Variability
por: Bjørlykke, Yngvild, et al.
Publicado: (2019)

Evaluation of four novel genetic variants affecting hemoglobin A1c levels in a population-based type 2 diabetes cohort (the HUNT2 study)
por: Hertel, Jens K, et al.
Publicado: (2011)

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle
por: Qanbari, Saber, et al.
Publicado: (2011)

A Likelihood Approach for Uncovering Selective Sweep Signatures from Haplotype Data
por: Harris, Alexandre M, et al.
Publicado: (2020)

A hidden Markov model for haplotype inference for present-absent data of clustered genes using identified haplotypes and haplotype patterns
por: Wu, Jihua, et al.
Publicado: (2014)

The position of single-base deletions in the VNTR sequence of the carboxyl ester lipase (CEL) gene determines proteotoxicity
por: Gravdal, Anny, et al.
Publicado: (2021)

Assessing the Causal Relationship of Maternal Height on Birth Size and Gestational Age at Birth: A Mendelian Randomization Analysis
por: Zhang, Ge, et al.
Publicado: (2015)

Focus on the spectra that matter by clustering of quantification data in shotgun proteomics
por: The, Matthew, et al.
Publicado: (2020)

Triqler for MaxQuant: Enhancing Results from MaxQuant by Bayesian Error Propagation and Integration
por: The, Matthew, et al.
Publicado: (2021)

A Genomic Portrait of Haplotype Diversity and Signatures of Selection in Indigenous Southern African Populations
por: Chimusa, Emile R., et al.
Publicado: (2015)

Ancestral Haplotype Mapping for GWAS and Detection of Signatures of Selection in Admixed Dairy Cattle of Kenya
por: Aliloo, Hassan, et al.
Publicado: (2020)

The Doctrine of Signatures in Israel—Revision and Spatiotemporal Patterns
por: Dafni, Amots, et al.
Publicado: (2021)

Pseurotin D Inhibits the Activation of Human Lymphocytes
por: Rubanova, Daniela, et al.
Publicado: (2021)

Pseurotin D Induces Apoptosis through Targeting Redox Sensitive Pathways in Human Lymphoid Leukemia Cells
por: Mosejová, Eva, et al.
Publicado: (2021)

Mapping Haplotype-haplotype Interactions with Adaptive LASSO
por: Li, Ming, et al.
Publicado: (2010)

Detecting Local Haplotype Sharing and Haplotype Association
por: Xu, Hanli, et al.
Publicado: (2014)

Importance of Block Randomization When Designing Proteomics Experiments
por: Burger, Bram, et al.
Publicado: (2020)

Automated splitting into batches for observational biomedical studies with sequential processing
por: Burger, Bram, et al.
Publicado: (2022)

Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0
por: The, Matthew, et al.
Publicado: (2016)

Comprehensive characterization of copy number variation (CNV) called from array, long- and short-read data
por: Lavrichenko, Ksenia, et al.
Publicado: (2021)

Long-range, high-throughput haplotype determination via haplotype-fusion PCR and ligation haplotyping
por: Turner, Daniel J., et al.
Publicado: (2008)

Powerful testing via hierarchical linkage disequilibrium in haplotype association studies
por: Balliu, Brunilda, et al.
Publicado: (2019)

From sequence to structure to networks
por: Yosef, Nir, et al.
Publicado: (2008)

Computational Mass Spectrometry–Based Proteomics
por: Käll, Lukas, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_5bs3blh0ncirm8ge5rcaj8e877