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An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning

The past decade has witnessed rapid progress in deep learning for molecular design, owing to the availability of invertible and invariant representations for molecules such as simplified molecular-input line-entry system (SMILES), which has powered cheminformatics since the late 1980s. However, the...

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Autores principales: Xiao, Hang, Li, Rong, Shi, Xiaoyang, Chen, Yan, Zhu, Liangliang, Chen, Xi, Wang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622439/
https://www.ncbi.nlm.nih.gov/pubmed/37919277
http://dx.doi.org/10.1038/s41467-023-42870-7
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author Xiao, Hang
Li, Rong
Shi, Xiaoyang
Chen, Yan
Zhu, Liangliang
Chen, Xi
Wang, Lei
author_facet Xiao, Hang
Li, Rong
Shi, Xiaoyang
Chen, Yan
Zhu, Liangliang
Chen, Xi
Wang, Lei
author_sort Xiao, Hang
collection PubMed
description The past decade has witnessed rapid progress in deep learning for molecular design, owing to the availability of invertible and invariant representations for molecules such as simplified molecular-input line-entry system (SMILES), which has powered cheminformatics since the late 1980s. However, the design of elemental components and their structural arrangement in solid-state materials to achieve certain desired properties is still a long-standing challenge in physics, chemistry and biology. This is primarily due to, unlike molecular inverse design, the lack of an invertible crystal representation that satisfies translational, rotational, and permutational invariances. To address this issue, we have developed a simplified line-input crystal-encoding system (SLICES), which is a string-based crystal representation that satisfies both invertibility and invariances. The reconstruction routine of SLICES successfully reconstructed 94.95% of over 40,000 structurally and chemically diverse crystal structures, showcasing an unprecedented invertibility. Furthermore, by only encoding compositional and topological data, SLICES guarantees invariances. We demonstrate the application of SLICES in the inverse design of direct narrow-gap semiconductors for optoelectronic applications. As a string-based, invertible, and invariant crystal representation, SLICES shows promise as a useful tool for in silico materials discovery.
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spelling pubmed-106224392023-11-04 An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning Xiao, Hang Li, Rong Shi, Xiaoyang Chen, Yan Zhu, Liangliang Chen, Xi Wang, Lei Nat Commun Article The past decade has witnessed rapid progress in deep learning for molecular design, owing to the availability of invertible and invariant representations for molecules such as simplified molecular-input line-entry system (SMILES), which has powered cheminformatics since the late 1980s. However, the design of elemental components and their structural arrangement in solid-state materials to achieve certain desired properties is still a long-standing challenge in physics, chemistry and biology. This is primarily due to, unlike molecular inverse design, the lack of an invertible crystal representation that satisfies translational, rotational, and permutational invariances. To address this issue, we have developed a simplified line-input crystal-encoding system (SLICES), which is a string-based crystal representation that satisfies both invertibility and invariances. The reconstruction routine of SLICES successfully reconstructed 94.95% of over 40,000 structurally and chemically diverse crystal structures, showcasing an unprecedented invertibility. Furthermore, by only encoding compositional and topological data, SLICES guarantees invariances. We demonstrate the application of SLICES in the inverse design of direct narrow-gap semiconductors for optoelectronic applications. As a string-based, invertible, and invariant crystal representation, SLICES shows promise as a useful tool for in silico materials discovery. Nature Publishing Group UK 2023-11-02 /pmc/articles/PMC10622439/ /pubmed/37919277 http://dx.doi.org/10.1038/s41467-023-42870-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Xiao, Hang
Li, Rong
Shi, Xiaoyang
Chen, Yan
Zhu, Liangliang
Chen, Xi
Wang, Lei
An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
title An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
title_full An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
title_fullStr An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
title_full_unstemmed An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
title_short An invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
title_sort invertible, invariant crystal representation for inverse design of solid-state materials using generative deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622439/
https://www.ncbi.nlm.nih.gov/pubmed/37919277
http://dx.doi.org/10.1038/s41467-023-42870-7
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