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The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces

Paraclostridium bifermentans is a Gram-positive, rod-shaped bacterium that can inhabit various mesophilic environments such as soil, marine habitats, and polluted waters. Some species of Paraclostridium are reported to cause fatal infections in humans, although mechanisms and capacity for adaptation...

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Autores principales: Magome, Thuto Gomolemo, Ramatla, Tsepo, Mokgokong, Prudent, Thekisoe, Oriel, Lekota, Kgaugelo Edward
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622607/
https://www.ncbi.nlm.nih.gov/pubmed/37928322
http://dx.doi.org/10.1016/j.dib.2023.109660
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author Magome, Thuto Gomolemo
Ramatla, Tsepo
Mokgokong, Prudent
Thekisoe, Oriel
Lekota, Kgaugelo Edward
author_facet Magome, Thuto Gomolemo
Ramatla, Tsepo
Mokgokong, Prudent
Thekisoe, Oriel
Lekota, Kgaugelo Edward
author_sort Magome, Thuto Gomolemo
collection PubMed
description Paraclostridium bifermentans is a Gram-positive, rod-shaped bacterium that can inhabit various mesophilic environments such as soil, marine habitats, and polluted waters. Some species of Paraclostridium are reported to cause fatal infections in humans, although mechanisms and capacity for adaptation are still unknown. We hereby present the whole genome sequence data of P. bifermentans T2 strain isolated from sheep faecal matter in Potchefstroom, South Africa. DNA libraries were sequenced on the Oxford Nanopore Mk1B platform. The generated sequence data was assembled and polished using Flye assembler. Genome data analysis yielded a genome size of 2 911,782 bp, comprising of a 27.8 % G + C content. Rapid Annotation using Subsystem Technology (RAST) showed that the draft genome of this strain consists of 6 514 coding sequences (CDS). The pan-genome was defined by a total of 16 288 CDSs, grouping the strain with the genome of P. bifermentans SampleS7P1. The draft genome sequence has been deposited in NCBI GenBank with the accession number of JAUPET000000000.
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spelling pubmed-106226072023-11-04 The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces Magome, Thuto Gomolemo Ramatla, Tsepo Mokgokong, Prudent Thekisoe, Oriel Lekota, Kgaugelo Edward Data Brief Data Article Paraclostridium bifermentans is a Gram-positive, rod-shaped bacterium that can inhabit various mesophilic environments such as soil, marine habitats, and polluted waters. Some species of Paraclostridium are reported to cause fatal infections in humans, although mechanisms and capacity for adaptation are still unknown. We hereby present the whole genome sequence data of P. bifermentans T2 strain isolated from sheep faecal matter in Potchefstroom, South Africa. DNA libraries were sequenced on the Oxford Nanopore Mk1B platform. The generated sequence data was assembled and polished using Flye assembler. Genome data analysis yielded a genome size of 2 911,782 bp, comprising of a 27.8 % G + C content. Rapid Annotation using Subsystem Technology (RAST) showed that the draft genome of this strain consists of 6 514 coding sequences (CDS). The pan-genome was defined by a total of 16 288 CDSs, grouping the strain with the genome of P. bifermentans SampleS7P1. The draft genome sequence has been deposited in NCBI GenBank with the accession number of JAUPET000000000. Elsevier 2023-10-10 /pmc/articles/PMC10622607/ /pubmed/37928322 http://dx.doi.org/10.1016/j.dib.2023.109660 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Magome, Thuto Gomolemo
Ramatla, Tsepo
Mokgokong, Prudent
Thekisoe, Oriel
Lekota, Kgaugelo Edward
The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces
title The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces
title_full The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces
title_fullStr The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces
title_full_unstemmed The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces
title_short The draft genome and pan-genome structure of Paraclostridium bifermentans strain T2 isolated from sheep faeces
title_sort draft genome and pan-genome structure of paraclostridium bifermentans strain t2 isolated from sheep faeces
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622607/
https://www.ncbi.nlm.nih.gov/pubmed/37928322
http://dx.doi.org/10.1016/j.dib.2023.109660
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