Cargando…
Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease
Chronic kidney disease (CKD) is a common disease that seriously endangers human health. However, the potential relationship between xanthine oxidoreductase (XOR) activity and CKD remains unclear. In this study, we used clinical data, CKD datasets from the Gene Expression Omnibus database, and untarg...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622700/ https://www.ncbi.nlm.nih.gov/pubmed/37927553 http://dx.doi.org/10.1016/j.isci.2023.107332 |
_version_ | 1785130598731350016 |
---|---|
author | Zhang, Yiyuan Ding, Xiaobao Guo, Lihao Zhong, Yanan Xie, Juan Xu, Yong Li, Hailun Zheng, Donghui |
author_facet | Zhang, Yiyuan Ding, Xiaobao Guo, Lihao Zhong, Yanan Xie, Juan Xu, Yong Li, Hailun Zheng, Donghui |
author_sort | Zhang, Yiyuan |
collection | PubMed |
description | Chronic kidney disease (CKD) is a common disease that seriously endangers human health. However, the potential relationship between xanthine oxidoreductase (XOR) activity and CKD remains unclear. In this study, we used clinical data, CKD datasets from the Gene Expression Omnibus database, and untargeted metabolomics to explain the relationship between XOR activity and CKD. First, XOR activity showed high correlation with the biomarkers of CKD, such as serum creatinine, blood urea nitrogen, uric acid, and estimated glomerular filtration rate. Then, we used least absolute shrinkage and selection operator logical regression algorithm and random forest algorithm to screen CKD molecular markers from differentially expressed genes, and the results of qRT-PCR of XDH, KOX-1, and ROMO1 were in accordance with the results of bioinformatics analyses. In addition, untargeted metabolomics analysis revealed that the purine metabolism pathway was significantly enriched in CKD patients in the simulated models of kidney fibrosis. |
format | Online Article Text |
id | pubmed-10622700 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-106227002023-11-04 Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease Zhang, Yiyuan Ding, Xiaobao Guo, Lihao Zhong, Yanan Xie, Juan Xu, Yong Li, Hailun Zheng, Donghui iScience Article Chronic kidney disease (CKD) is a common disease that seriously endangers human health. However, the potential relationship between xanthine oxidoreductase (XOR) activity and CKD remains unclear. In this study, we used clinical data, CKD datasets from the Gene Expression Omnibus database, and untargeted metabolomics to explain the relationship between XOR activity and CKD. First, XOR activity showed high correlation with the biomarkers of CKD, such as serum creatinine, blood urea nitrogen, uric acid, and estimated glomerular filtration rate. Then, we used least absolute shrinkage and selection operator logical regression algorithm and random forest algorithm to screen CKD molecular markers from differentially expressed genes, and the results of qRT-PCR of XDH, KOX-1, and ROMO1 were in accordance with the results of bioinformatics analyses. In addition, untargeted metabolomics analysis revealed that the purine metabolism pathway was significantly enriched in CKD patients in the simulated models of kidney fibrosis. Elsevier 2023-07-10 /pmc/articles/PMC10622700/ /pubmed/37927553 http://dx.doi.org/10.1016/j.isci.2023.107332 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Zhang, Yiyuan Ding, Xiaobao Guo, Lihao Zhong, Yanan Xie, Juan Xu, Yong Li, Hailun Zheng, Donghui Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
title | Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
title_full | Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
title_fullStr | Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
title_full_unstemmed | Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
title_short | Comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
title_sort | comprehensive analysis of the relationship between xanthine oxidoreductase activity and chronic kidney disease |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10622700/ https://www.ncbi.nlm.nih.gov/pubmed/37927553 http://dx.doi.org/10.1016/j.isci.2023.107332 |
work_keys_str_mv | AT zhangyiyuan comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT dingxiaobao comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT guolihao comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT zhongyanan comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT xiejuan comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT xuyong comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT lihailun comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease AT zhengdonghui comprehensiveanalysisoftherelationshipbetweenxanthineoxidoreductaseactivityandchronickidneydisease |