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Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China

OBJECTIVES: “Candidatus Liberibacter asiaticus” (CLas) is an un-culturable α-proteobacterium that caused citrus Huanglongbing (HLB), a destructive disease threatening citrus production worldwide. In China, the presence of HLB was first reported in Chaoshan region of Guangdong province, China around...

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Autores principales: Zheng, Yongqin, Li, Yun, Xu, Pengbin, Liu, Chaoji, Chen, Jianchi, Deng, Xiaoling, Zheng, Zheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625202/
https://www.ncbi.nlm.nih.gov/pubmed/37923990
http://dx.doi.org/10.1186/s12863-023-01160-3
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author Zheng, Yongqin
Li, Yun
Xu, Pengbin
Liu, Chaoji
Chen, Jianchi
Deng, Xiaoling
Zheng, Zheng
author_facet Zheng, Yongqin
Li, Yun
Xu, Pengbin
Liu, Chaoji
Chen, Jianchi
Deng, Xiaoling
Zheng, Zheng
author_sort Zheng, Yongqin
collection PubMed
description OBJECTIVES: “Candidatus Liberibacter asiaticus” (CLas) is an un-culturable α-proteobacterium that caused citrus Huanglongbing (HLB), a destructive disease threatening citrus production worldwide. In China, the presence of HLB was first reported in Chaoshan region of Guangdong province, China around a century ago. Thus, whole genome information of CLas strains from Chaoshan area become the most important resource to understand the population diversity and evaluation of CLas in China. DATA DESCRIPTION: CLas strain GDCZ was originally from Chaozhou city (Chaoshan area) and sequenced using PacBio Sequel long-read sequencing and Illumina short-read sequencing. The genome of strain GDCZ comprised of 1,230,507 bp with an average G + C content of 36.4%, along with a circular CLasMV1 phage: CLasMV1_GDCZ (8,869 bp). The CLas strain GDCZ contained a Type 2 prophage (37,452 bp) and encoded a total of 1,057 open reading frames and 53 RNA genes. The whole genome sequence of CLas strain GDCZ from the historical HLB endemic region in China will serve as a useful resource for further analyses of CLas evolution and HLB epidemiology in China and world.
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spelling pubmed-106252022023-11-05 Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China Zheng, Yongqin Li, Yun Xu, Pengbin Liu, Chaoji Chen, Jianchi Deng, Xiaoling Zheng, Zheng BMC Genom Data Data Note OBJECTIVES: “Candidatus Liberibacter asiaticus” (CLas) is an un-culturable α-proteobacterium that caused citrus Huanglongbing (HLB), a destructive disease threatening citrus production worldwide. In China, the presence of HLB was first reported in Chaoshan region of Guangdong province, China around a century ago. Thus, whole genome information of CLas strains from Chaoshan area become the most important resource to understand the population diversity and evaluation of CLas in China. DATA DESCRIPTION: CLas strain GDCZ was originally from Chaozhou city (Chaoshan area) and sequenced using PacBio Sequel long-read sequencing and Illumina short-read sequencing. The genome of strain GDCZ comprised of 1,230,507 bp with an average G + C content of 36.4%, along with a circular CLasMV1 phage: CLasMV1_GDCZ (8,869 bp). The CLas strain GDCZ contained a Type 2 prophage (37,452 bp) and encoded a total of 1,057 open reading frames and 53 RNA genes. The whole genome sequence of CLas strain GDCZ from the historical HLB endemic region in China will serve as a useful resource for further analyses of CLas evolution and HLB epidemiology in China and world. BioMed Central 2023-11-04 /pmc/articles/PMC10625202/ /pubmed/37923990 http://dx.doi.org/10.1186/s12863-023-01160-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Zheng, Yongqin
Li, Yun
Xu, Pengbin
Liu, Chaoji
Chen, Jianchi
Deng, Xiaoling
Zheng, Zheng
Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China
title Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China
title_full Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China
title_fullStr Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China
title_full_unstemmed Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China
title_short Genome sequence resource for “Candidatus Liberibacter asiaticus” strain GDCZ from a historical HLB endemic region in China
title_sort genome sequence resource for “candidatus liberibacter asiaticus” strain gdcz from a historical hlb endemic region in china
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625202/
https://www.ncbi.nlm.nih.gov/pubmed/37923990
http://dx.doi.org/10.1186/s12863-023-01160-3
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